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CG13116 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34288, updated on 18-Sep-2024

Summary

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Official Symbol
CG13116provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0032139
Locus tag
Dmel_CG13116
See related
AllianceGenome:FB:FBgn0032139
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG13116
Orthologs
all
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Genomic context

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See CG13116 in Genome Data Viewer
Location:
30C6-30C6; 2-36 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (9729940..9730945)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (9729940..9730945)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene pelota Neighboring gene uncharacterized protein Neighboring gene Nckx30C Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR46529

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Socially-responsive gene expression in male Drosophila melanogaster is influenced by the sex of the interacting partner. Ellis LL, et al. Genetics, 2011 Jan. PMID 20980240, Free PMC Article
  2. Transcriptomic analysis of inbreeding depression in cold-sensitive Drosophila melanogaster shows upregulation of the immune response. Vermeulen CJ, et al. J Evol Biol, 2013 Sep. PMID 23944235
  3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  4. Transient junction anisotropies orient annular cell polarization in the Drosophila airway tubes. Hosono C, et al. Nat Cell Biol, 2015 Dec. PMID 26551273
  5. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG13116-PA
CG13116-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    9729940..9730945
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_135462.3 → NP_609306.2  uncharacterized protein Dmel_CG13116, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609306.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8STJ9, Q9VL94
    Related
    FBpp0079459
    Conserved Domains (1) summary
    pfam03154
    Location:143 → 209
    Atrophin-1; Atrophin-1 family

  2. NM_001273368.1 → NP_001260297.1  uncharacterized protein Dmel_CG13116, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260297.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8STJ9, Q9VL94
    Conserved Domains (1) summary
    pfam03154
    Location:143 → 209
    Atrophin-1; Atrophin-1 family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8STJ9 Q8STJ9
Q9VL94 Q9VL94

Gene LinkOut

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