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vir-1 virus-induced RNA 1 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34652, updated on 9-Dec-2024

Summary

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Official Symbol
vir-1provided by FlyBase
Official Full Name
virus-induced RNA 1provided by FlyBase
Primary source
FLYBASE:FBgn0043841
Locus tag
Dmel_CG31764
See related
AllianceGenome:FB:FBgn0043841
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BEST:GH02216; CG15493; CG31764; CG5453; Dmel\CG31764; Vir-1; vir1; Vir1
Summary
Involved in defense response to virus. Is expressed in several structures, including adult head; adult heart; embryonic central brain; ganglia; and midline glial cell. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See vir-1 in Genome Data Viewer
Location:
33E3-33E4; 2-46 cM
Exon count:
7
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (12403270..12423439, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (12403270..12423439, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene bruno 2 Neighboring gene uncharacterized protein Neighboring gene Polycystic kidney disease 2 Neighboring gene uncharacterized protein Neighboring gene Fam92

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Nora Virus VP4b and ORF1 Circulate in Hemolymph of Infected D. melanogaster with Coordinate Expression of Vago and Vir-1. Macke A, et al. Vaccines (Basel), 2020 Aug 31. PMID 32878003, Free PMC Article
  2. Essential function in vivo for Dicer-2 in host defense against RNA viruses in drosophila. Galiana-Arnoux D, et al. Nat Immunol, 2006 Jun. PMID 16554838
  3. Induction of host defence responses by Drosophila C virus. Hedges LM, et al. J Gen Virol, 2008 Jun. PMID 18474566
  4. DIP1 plays an antiviral role against DCV infection in Drosophila melanogaster. Zhang Q, et al. Biochem Biophys Res Commun, 2015 May 1. PMID 25770426
  5. Expression of a set of glial cell-specific markers in the Drosophila embryonic central nervous system. Ahn HJ, et al. BMB Rep, 2014 Jun. PMID 24286328, Free PMC Article

See all (101) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in defense response to virus IEP
Inferred from Expression Pattern
more info
 PubMed 

General protein information

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Preferred Names
virus-induced RNA 1
Names
CG31764-PA
CG31764-PB
CG31764-PC
CG31764-PD
CG31764-PE
CG31764-PG
CG31764-PH
vir-1-PA
vir-1-PB
vir-1-PC
vir-1-PD
vir-1-PE
vir-1-PG
vir-1-PH
virus induced RNA-1
virus-induced 1
virus-induced RNA1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    12403270..12423439 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001273483.1 → NP_001260412.1  virus-induced RNA 1, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260412.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9PFQ2, Q8SZ36
    Conserved Domains (1) summary
    PTZ00121
    Location:263 → 391
    PTZ00121; MAEBL; Provisional

  2. NM_165011.3 → NP_723747.1  virus-induced RNA 1, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_723747.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8R1, Q8SZ36
    Related
    FBpp0079970

  3. NM_165010.3 → NP_723746.1  virus-induced RNA 1, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_723746.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q0E8R1, Q8SZ36
    Related
    FBpp0079971

  4. NM_001259074.2 → NP_001246003.1  virus-induced RNA 1, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246003.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3YBY4

  5. NM_001038812.2 → NP_001033901.1  virus-induced RNA 1, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001033901.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q3YBY4

  6. NM_001259075.2 → NP_001246004.2  virus-induced RNA 1, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246004.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXD5

  7. NM_205966.2 → NP_995688.1  virus-induced RNA 1, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_995688.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SXD5
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9PFQ2 M9PFQ2
Q0E8R1 Q0E8R1
Q3YBY4 Q3YBY4
Q8SXD5 Q8SXD5
Q8SZ36 Q8SZ36

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