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CG16972 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34715, updated on 4-Jan-2025

Summary

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Official Symbol
CG16972provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0032481
Locus tag
Dmel_CG16972
See related
AllianceGenome:FB:FBgn0032481
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0140519.52; Dmel\CG16972
Summary
Is expressed in adult head. [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
all
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Genomic context

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See CG16972 in Genome Data Viewer
Location:
34A9-34A9; 2-47 cM
Exon count:
5
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (13197102..13203295, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (13197102..13203295, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Alg7 dolichyl-phosphate N-acetylglucosaminephosphotransferase Neighboring gene beta-1,4-mannosyl-glycoprotein 4-beta-N-acetylglucosaminyltransferase Neighboring gene uncharacterized protein Neighboring gene Radial spoke head protein 1 Neighboring gene ER degradation enhancer, mannosidase alpha-like 2 Neighboring gene Phosphoethanolamine cytidylyltransferase Neighboring gene small nuclear RNA U2 at 34AB a Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A multi-layered structure of the interphase chromocenter revealed by proximity-based biotinylation. Kochanova NY, et al. Nucleic Acids Res, 2020 May 7. PMID 32182352, Free PMC Article
  2. Gain-of-function screen identifies a role of the Sec61alpha translocon in Drosophila postmitotic neurotoxicity. Kanuka H, et al. Biochim Biophys Acta, 2005 Nov 30. PMID 16243437
  3. Transcription factor networks in Drosophila melanogaster. Rhee DY, et al. Cell Rep, 2014 Sep 25. PMID 25242320, Free PMC Article
  4. Genome-wide phenotypic RNAi screen in the Drosophila wing: phenotypic description of functional classes. López-Varea A, et al. G3 (Bethesda), 2021 Dec 8. PMID 34599810, Free PMC Article
  5. mRNA-Associated Processes and Their Influence on Exon-Intron Structure in Drosophila melanogaster. Lepennetier G, et al. G3 (Bethesda), 2016 Jun 1. PMID 27172210, Free PMC Article

See all (22) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG16972-PA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    13197102..13203295 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_135768.3 → NP_609612.2  uncharacterized protein Dmel_CG16972 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609612.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8SWW4, Q9VK26
    Related
    FBpp0080066
    Conserved Domains (1) summary
    cl25496
    Location:971 → 1051
    Herpes_BLLF1; Herpes virus major outer envelope glycoprotein (BLLF1)
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8SWW4 Q8SWW4

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