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CG5953 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 34985, updated on 9-Dec-2024

Summary

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Official Symbol
CG5953provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0032587
Locus tag
Dmel_CG5953
See related
AllianceGenome:FB:FBgn0032587
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG5953
Summary
Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG5953 in Genome Data Viewer
Location:
36A2-36A3; 2-52 cM
Exon count:
4
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (16508078..16532877, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (16508078..16532877, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR44994 Neighboring gene Tetratricopeptide repeat protein 2 Neighboring gene mir-4943 stem loop Neighboring gene long non-coding RNA:CR45354 Neighboring gene long non-coding RNA:CR45355

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Two sequential gene expression programs bridged by cell division support long-distance collective cell migration. Sun J, et al. Development, 2024 May 15. PMID 38646822, Free PMC Article
  2. Mechanisms of Groucho-mediated repression revealed by genome-wide analysis of Groucho binding and activity. Chambers M, et al. BMC Genomics, 2017 Feb 28. PMID 28245789, Free PMC Article
  3. Spatiotemporal dynamics and genome-wide association genome-wide association analysis of desiccation tolerance in Drosophila melanogaster. Rajpurohit S, et al. Mol Ecol, 2018 Sep. PMID 30051644, Free PMC Article
  4. Specific SR protein-dependent splicing substrates identified through genomic SELEX. Kim S, et al. Nucleic Acids Res, 2003 Apr 1. PMID 12655012, Free PMC Article
  5. Physiologic and anatomic characterization of the brain surface glia barrier of Drosophila. DeSalvo MK, et al. Glia, 2011 Sep. PMID 21351158, Free PMC Article

See all (47) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
uncharacterized protein
Names
CG5953-PA
CG5953-PB
CG5953-PC
CG5953-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    16508078..16532877 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001273574.1 → NP_001260503.1  uncharacterized protein Dmel_CG5953, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001260503.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VJK4
    Conserved Domains (1) summary
    pfam10545
    Location:86 → 170
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  2. NM_135952.1 → NP_609796.1  uncharacterized protein Dmel_CG5953, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609796.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VJK4
    Related
    FBpp0080430, FBtr0080873
    Conserved Domains (1) summary
    pfam10545
    Location:86 → 170
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  3. NM_165165.1 → NP_723976.1  uncharacterized protein Dmel_CG5953, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_723976.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VJK4
    Related
    FBpp0080431, FBtr0080874
    Conserved Domains (1) summary
    pfam10545
    Location:86 → 170
    MADF_DNA_bdg; Alcohol dehydrogenase transcription factor Myb/SANT-like

  4. NM_001169518.1 → NP_001162989.1  uncharacterized protein Dmel_CG5953, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001162989.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A4IJ65, E1JHJ2
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
E1JHJ2 E1JHJ2
Q9VJK4 Q9VJK4

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