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rdo reduced ocelli [ Drosophila melanogaster (fruit fly) ]

Gene ID: 35077, updated on 9-Dec-2024

Summary

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Official Symbol
rdoprovided by FlyBase
Official Full Name
reduced ocelliprovided by FlyBase
Primary source
FLYBASE:FBgn0243486
Locus tag
Dmel_CG15151
See related
AllianceGenome:FB:FBgn0243486
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG15151; CT35050; Dmel\CG15151; PFE; Rdo
Summary
Involved in epithelium regeneration; ocellus development; and regulation of stem cell division. Is expressed in several structures, including adult head; embryonic brain; embryonic ventral epidermis; epithelium; and eye. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See rdo in Genome Data Viewer
Location:
36E3-36E3; 2-53 cM
Exon count:
15
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (18012380..18070246)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (18012380..18070246)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene elfless Neighboring gene Arrestin 1 Neighboring gene neither inactivation nor afterpotential D

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Mutations affecting phenol oxidase activity in Drosophila: quicksilver and tyrosinase-1. Pentz ES, et al. Biochem Genet, 1990 Apr. PMID 2116788
  2. Visualization of binding patterns for five Leucine-rich repeat proteins in the Drosophila embryo. Bali N, et al. MicroPubl Biol, 2019 Dec 18. PMID 32550403, Free PMC Article
  3. The retrograde IFT dynein is required for normal function of diverse mechanosensory cilia in Drosophila. Sharma Y, et al. Front Mol Neurosci, 2023. PMID 37808471, Free PMC Article
  4. Ultrastructure of the ocellar visual system in normal and mutant Drosophila melanogaster. Stark WS, et al. J Neurogenet, 1989 May. PMID 2500507
  5. reduced ocelli encodes the leucine rich repeat protein Pray For Elves in Drosophila melanogaster. Caldwell JC, et al. Fly (Austin), 2007 May-Jun. PMID 18820435, Free PMC Article

See all (52) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. The PFE locus maps to polytene region 36E on chromosome 2L between elfless (Fbgn0032660) and Arrestin 1 (Fbgn0000120).
    Title: reduced ocelli encodes the leucine rich repeat protein Pray For Elves in Drosophila melanogaster.
Submit: New GeneRIF Correction

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

mobile_element

  • Loc: 18051931-18061019 mobile_element_type = transposon:roo{}402

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in epithelium regeneration IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in ocellus development IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in regulation of stem cell division IMP
Inferred from Mutant Phenotype
more info
 PubMed 

General protein information

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Preferred Names
reduced ocelli
Names
CG15151-PA
CG15151-PB
pray For elves
rdo-PA
rdo-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    18012380..18070246
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001299095.1 → NP_001286024.1  reduced ocelli, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286024.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    X2J6K6
    Conserved Domains (4) summary
    cd00116
    Location:151 → 422
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:108 → 131
    LRR_RI; leucine-rich repeat [structural motif]
    pfam12799
    Location:298 → 342
    LRR_4; Leucine Rich repeats (2 copies)
    pfam13855
    Location:274 → 334
    LRR_8; Leucine rich repeat

  2. NM_136017.3 → NP_609861.1  reduced ocelli, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_609861.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VJA9
    Related
    FBpp0080582
    Conserved Domains (3) summary
    cd00116
    Location:151 → 406
    LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
    sd00033
    Location:108 → 131
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:274 → 334
    LRR_8; Leucine rich repeat
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VJA9 Q9VJA9
X2J6K6 X2J6K6

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