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CG43338 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 35117, updated on 9-Dec-2024

Summary

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Official Symbol
CG43338provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0263079
Locus tag
Dmel_CG43338
See related
AllianceGenome:FB:FBgn0263079
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG15165; CG31790; CG42627; Dmel\CG43338
Old locus tag
Dmel_CG31790
Summary
Orthologous to human CCDC170 (coiled-coil domain containing 170). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG43338 in Genome Data Viewer
Location:
36F10-36F10; 2-53 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (18666892..18671246, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (18666892..18671246, complement)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Intraflagellar transport 46 Neighboring gene Misexpression suppressor of ras 3 Neighboring gene Cytochrome P450 310a1 Neighboring gene pseudo Neighboring gene uncharacterized protein Neighboring gene Male-specific transcript 36Fb

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Messenger RNA is a functional component of a chromatin insulator complex. Matzat LH, et al. EMBO Rep, 2013 Oct. PMID 23917615, Free PMC Article
  2. Genes conserved in bilaterians but jointly lost with Myc during nematode evolution are enriched in cell proliferation and cell migration functions. Erives AJ. Dev Genes Evol, 2015 Sep. PMID 26173873, Free PMC Article
  3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  4. CRISPR-based modular assembly of a UAS-cDNA/ORF plasmid library for more than 5500 Drosophila genes conserved in humans. Wei P, et al. Genome Res, 2020 Jan. PMID 31722958, Free PMC Article
  5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG43338-PA
CG43338-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    18666892..18671246 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001259151.2 → NP_001246080.1  uncharacterized protein Dmel_CG43338, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246080.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    M9NDT0
    Conserved Domains (2) summary
    TIGR02168
    Location:77 → 412
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:305 → 644
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type

  2. NM_165257.2 → NP_724119.1  uncharacterized protein Dmel_CG43338, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724119.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8MSR8, Q9VJ69
    Related
    FBpp0297774
    Conserved Domains (2) summary
    TIGR02168
    Location:50 → 385
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
    TIGR02169
    Location:278 → 617
    SMC_prok_A; chromosome segregation protein SMC, primarily archaeal type
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
M9NDT0 M9NDT0
Q9VJ69 Q9VJ69

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