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Tc00.1047053506773.130 pumilio-repeat, RNA-binding protein, putative [ Trypanosoma cruzi ]

Gene ID: 3548536, updated on 23-Nov-2023

Summary

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Gene symbol
Tc00.1047053506773.130
Gene description
pumilio-repeat, RNA-binding protein, putative
Locus tag
Tc00.1047053506773.130
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Trypanosoma cruzi (strain: CL Brener)
Lineage
Eukaryota; Discoba; Euglenozoa; Kinetoplastea; Metakinetoplastina; Trypanosomatida; Trypanosomatidae; Trypanosoma; Schizotrypanum
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Genomic context

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See Tc00.1047053506773.130 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_001849519.1Genomic Context describing neighboring genes Neighboring gene tRNA-Gly Neighboring gene tRNA-Leu Neighboring gene DNA ligase, putative Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_001849519.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The genome sequence of Trypanosoma cruzi, etiologic agent of Chagas disease. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020725
  2. Comparative genomics of trypanosomatid parasitic protozoa. El-Sayed NM, et al. Science, 2005 Jul 15. PMID 16020724
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

  • heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053508799.70

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in post-transcriptional regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pumilio-repeat, RNA-binding protein, putative
XP_816608.1
  • heterozygous, Esmeraldo-like haplotype
    allele of Tc00.1047053508799.70

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_001849519.1 Reference assembly

    Range
    32190..34274 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_811515.1 → XP_816608.1  pumilio-repeat, RNA-binding protein, putative [Trypanosoma cruzi]

    See identical proteins and their annotated locations for XP_816608.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A2V2WYI3, A0A7J6YB82, Q4DQE9
    Conserved Domains (1) summary
    cl28443
    Location:455 → 686
    Pumilio; Pumilio-family RNA binding domain
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases
Research Materials