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twk-43 Potassium channel domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565024, updated on 9-Dec-2024

Summary

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Official Symbol
twk-43
Official Full Name
Potassium channel domain-containing protein
Primary source
WormBase:WBGene00006693
Locus tag
CELE_F32H5.7
See related
AllianceGenome:WB:WBGene00006693
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable outward rectifier potassium channel activity and potassium ion leak channel activity. Predicted to be involved in potassium ion transmembrane transport. Predicted to be located in membrane. Predicted to be active in plasma membrane. Is expressed in cholinergic neurons and ventral cord neurons. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See twk-43 in Genome Data Viewer
Location:
chromosome: V
Exon count:
16
Sequence:
Chromosome: V; NC_003283.11 (13346278..13356168)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Ligand-gated ion channel 50 Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene Peptidase C1A papain C-terminal domain-containing protein Neighboring gene FMRF-Like Peptide Neighboring gene Major facilitator superfamily (MFS) profile domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Structure and function of two-pore-domain K+ channels: contributions from genetic model organisms. Buckingham SD, et al. Trends Pharmacol Sci, 2005 Jul. PMID 15939489
  2. OrthoList: a compendium of C. elegans genes with human orthologs. Shaye DD, et al. PLoS One, 2011. PMID 21647448, Free PMC Article
  3. OrthoList 2: A New Comparative Genomic Analysis of Human and Caenorhabditis elegans Genes. Kim W, et al. Genetics, 2018 Oct. PMID 30120140, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables outward rectifier potassium channel activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables potassium channel activity IEA
Inferred from Electronic Annotation
more info
  
enables potassium ion leak channel activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in monoatomic ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
involved_in potassium ion transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
  
is_active_in plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
Potassium channel domain-containing protein
NP_001263876.1
  • Confirmed by transcript evidence
NP_001263877.1
  • Confirmed by transcript evidence
NP_001263878.1
  • Confirmed by transcript evidence
NP_872137.2
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    13346278..13356168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_182337.7 → NP_872137.2  Potassium channel domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_872137.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    G5EEH1
    Conserved Domains (1) summary
    pfam07885
    Location:162 → 218
    Ion_trans_2; Ion channel

  2. NM_001276948.3 → NP_001263877.1  Potassium channel domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263877.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8ESK0
    Conserved Domains (1) summary
    pfam07885
    Location:138 → 194
    Ion_trans_2; Ion channel

  3. NM_001276947.3 → NP_001263876.1  Potassium channel domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263876.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8ERV0
    Conserved Domains (1) summary
    pfam07885
    Location:147 → 203
    Ion_trans_2; Ion channel

  4. NM_001276949.3 → NP_001263878.1  Potassium channel domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001263878.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    K8FDZ5
    Conserved Domains (1) summary
    pfam07885
    Location:61 → 117
    Ion_trans_2; Ion channel
Nucleotide Protein
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