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C41D11.3 Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565087, updated on 9-Dec-2024

Summary

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Official Symbol
C41D11.3
Official Full Name
Cysteine/serine-rich nuclear protein N-terminal domain-containing protein
Primary source
WormBase:WBGene00016562
Locus tag
CELE_C41D11.3
See related
AllianceGenome:WB:WBGene00016562
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in amphid neurons; body wall musculature; pharyngeal muscle cell; and uterine muscle. Orthologous to several human genes including CSRNP3 (cysteine and serine rich nuclear protein 3). [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See C41D11.3 in Genome Data Viewer
Location:
chromosome: I
Exon count:
12
Sequence:
Chromosome: I; NC_003279.8 (4428457..4444348, complement)

Chromosome I - NC_003279.8Genomic Context describing neighboring genes Neighboring gene DH domain-containing protein Neighboring gene Guided entry of tail-anchored proteins factor 1 Neighboring gene Uncharacterized protein Neighboring gene Eukaryotic translation initiation factor 3 subunit H Neighboring gene Endonuclease G, mitochondrial Neighboring gene TM2 domain-containing protein C41D11.9

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003279.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IBA
Inferred from Biological aspect of Ancestor
more info
  
enables sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Cysteine/serine-rich nuclear protein N-terminal domain-containing protein
NP_001293389.1
  • Confirmed by transcript evidence
NP_001367499.1
  • Confirmed by transcript evidence
NP_001368494.1
  • Confirmed by transcript evidence
NP_001370421.1
  • Partially confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003279.8 Reference assembly

    Range
    4428457..4444348 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001379804.3 → NP_001367499.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3KLZ9
    Conserved Domains (1) summary
    pfam16019
    Location:174 → 363
    CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

  2. NM_001379803.2 → NP_001368494.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A078BS72
    Conserved Domains (1) summary
    pfam16019
    Location:563 → 752
    CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

  3. NM_001306460.3 → NP_001293389.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001293389.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A078BPM2
    Conserved Domains (1) summary
    pfam16019
    Location:562 → 750
    CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus

  4. NM_001382924.1 → NP_001370421.1  Cysteine/serine-rich nuclear protein N-terminal domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KYQ1
    Conserved Domains (2) summary
    pfam16019
    Location:174 → 363
    CSRNP_N; Cysteine/serine-rich nuclear protein N-terminus
    NF033913
    Location:48 → 147
    fibronec_FbpA; LPXTG-anchored fibronectin-binding protein FbpA
Nucleotide Protein
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