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clec-80 C-type lectin domain-containing protein [ Caenorhabditis elegans ]

Gene ID: 3565458, updated on 28-Oct-2024

Summary

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Official Symbol
clec-80
Official Full Name
C-type lectin domain-containing protein
Primary source
WormBase:WBGene00043062
Locus tag
CELE_Y54G2A.39
See related
AllianceGenome:WB:WBGene00043062
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See clec-80 in Genome Data Viewer
Location:
chromosome: IV
Exon count:
9
Sequence:
Chromosome: IV; NC_003282.8 (2823746..2828069)

Chromosome IV - NC_003282.8Genomic Context describing neighboring genes Neighboring gene ShKT domain-containing protein Neighboring gene C-type lectin domain-containing protein Neighboring gene ncRNA Neighboring gene Ras-GAP domain-containing protein Neighboring gene Up-regulated in Daf-2 domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003282.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  2. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

General protein information

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Preferred Names
C-type lectin domain-containing protein
NP_001023504.1
  • Confirmed by transcript evidence
NP_001368082.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003282.8 Reference assembly

    Range
    2823746..2828069
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001028333.4 → NP_001023504.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_001023504.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q60F71
    Conserved Domains (1) summary
    smart00034
    Location:29 → 141
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

  2. NM_001380111.2 → NP_001368082.1  C-type lectin domain-containing protein [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95XX5
    Conserved Domains (1) summary
    smart00034
    Location:29 → 146
    CLECT; C-type lectin (CTL) or carbohydrate-recognition domain (CRD)

RNA

  1. NR_132458.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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