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tos-1 Target Of Splicing [ Caenorhabditis elegans ]

Gene ID: 3565833, updated on 18-Sep-2024

Summary

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Official Symbol
tos-1
Official Full Name
Target Of Splicing
Primary source
WormBase:WBGene00019466
Locus tag
CELE_K07B1.6
See related
AllianceGenome:WB:WBGene00019466
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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Genomic context

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See tos-1 in Genome Data Viewer
Location:
chromosome: V
Exon count:
4
Sequence:
Chromosome: V; NC_003283.11 (9338859..9344203, complement)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene UnCoupling Protein (mitochondrial substrate carrier) Neighboring gene Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial Neighboring gene G-patch domain-containing protein Neighboring gene Trypsin-like protease try-5

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. In vivo effects on intron retention and exon skipping by the U2AF large subunit and SF1/BBP in the nematode Caenorhabditis elegans. Ma L, et al. RNA, 2011 Dec. PMID 22033331, Free PMC Article
  2. The Caenorhabditis elegans gene mfap-1 encodes a nuclear protein that affects alternative splicing. Ma L, et al. PLoS Genet, 2012. PMID 22829783, Free PMC Article
  3. A genome-wide study of PDZ-domain interactions in C. elegans reveals a high frequency of non-canonical binding. Lenfant N, et al. BMC Genomics, 2010 Nov 26. PMID 21110867, Free PMC Article
  4. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

General protein information

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Preferred Names
Target Of Splicing
NP_001367721.1
  • Product from WormBase gene class tos;
    Confirmed by transcript evidence
NP_001379853.1
  • Product from WormBase gene class tos;
    Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    9338859..9344203 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001392573.1 → NP_001379853.1  Target Of Splicing [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q95R01

  2. NM_001380724.3 → NP_001367721.1  Target Of Splicing [Caenorhabditis elegans]

    Status: REVIEWED

    UniProtKB/TrEMBL
    H2KZK5

RNA

  1. NR_133617.1 RNA Sequence

    Status: REVIEWED

  2. NR_133618.1 RNA Sequence

    Status: REVIEWED

  3. NR_133619.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
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