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Y49A3A.3 tRNA:m(4)X modification enzyme TRM13 [ Caenorhabditis elegans ]

Gene ID: 3565972, updated on 4-Jan-2025

Summary

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Official Symbol
Y49A3A.3
Official Full Name
tRNA:m(4)X modification enzyme TRM13
Primary source
WormBase:WBGene00013026
Locus tag
CELE_Y49A3A.3
See related
AllianceGenome:WB:WBGene00013026
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Caenorhabditis elegans (strain: Bristol N2)
Lineage
Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
Summary
Predicted to enable tRNA methyltransferase activity. Predicted to be involved in tRNA methylation. Orthologous to human TRMT13 (tRNA methyltransferase 13 homolog). [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See Y49A3A.3 in Genome Data Viewer
Location:
chromosome: V
Exon count:
3
Sequence:
Chromosome: V; NC_003283.11 (14354410..14355741)

Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene Choline/EthanolaminePhosphoTransferase Neighboring gene ncRNA Neighboring gene V-type proton ATPase catalytic subunit A Neighboring gene Peptidyl-prolyl cis-trans isomerase 1 Neighboring gene ShKT domain-containing protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003283.11

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel LOTUS-domain proteins are organizational hubs that recruit C. elegans Vasa to germ granules. Cipriani PG, et al. Elife, 2021 Jul 5. PMID 34223818, Free PMC Article
  2. EPIC: software toolkit for elution profile-based inference of protein complexes. Hu LZ, et al. Nat Methods, 2019 Aug. PMID 31308550, Free PMC Article
  3. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by WormBase

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
enables methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA 2'-O-methyltransferase activity IEA
Inferred from Electronic Annotation
more info
  
enables tRNA methyltransferase activity IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
involved_in methylation IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA methylation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
  
involved_in tRNA processing IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tRNA:m(4)X modification enzyme TRM13
NP_506560.1
  • Confirmed by transcript evidence

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003283.11 Reference assembly

    Range
    14354410..14355741
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_074159.7 → NP_506560.1  tRNA:m(4)X modification enzyme TRM13 [Caenorhabditis elegans]

    See identical proteins and their annotated locations for NP_506560.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9XW93
    Conserved Domains (3) summary
    pfam05253
    Location:53 → 75
    zf-U11-48K; U11-48K-like CHHC zinc finger
    pfam11722
    Location:16 → 42
    zf-TRM13_CCCH; CCCH zinc finger in TRM13 protein
    cl17173
    Location:159 → 388
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
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