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Sdr39u1 short chain dehydrogenase/reductase family 39U, member 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361044, updated on 27-Nov-2024

Summary

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Official Symbol
Sdr39u1provided by RGD
Official Full Name
short chain dehydrogenase/reductase family 39U, member 1provided by RGD
Primary source
RGD:1309307
See related
EnsemblRapid:ENSRNOG00000020544 AllianceGenome:RGD:1309307
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309307
Summary
Predicted to be located in mitochondrion. Orthologous to human SDR39U1 (short chain dehydrogenase/reductase family 39U member 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Liver (RPKM 138.3), Heart (RPKM 119.9) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Sdr39u1 in Genome Data Viewer
Location:
15p13
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 15 NC_086033.1 (33348057..33350892, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 15 NC_051350.1 (29378156..29380989, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 15 NC_005114.4 (34563786..34567465, complement)

Chromosome 15 - NC_086033.1Genomic Context describing neighboring genes Neighboring gene NYN domain and retroviral integrase containing Neighboring gene cerebellin 3 precursor Neighboring gene KH and NYN domain containing Neighboring gene transfer RNA alanine (anticodon AGC) 50 Neighboring gene large ribosomal subunit protein eL21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Proteomic characterization of the human sperm nucleus. de Mateo S, et al. Proteomics, 2011 Jul. PMID 21630459
  2. Quantitative high-confidence human mitochondrial proteome and its dynamics in cellular context. Morgenstern M, et al. Cell Metab, 2021 Dec 7. PMID 34800366, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
 PubMed 

General protein information

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Preferred Names
epimerase family protein SDR39U1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108378.2 → NP_001101848.1  epimerase family protein SDR39U1 isoform 2

    See identical proteins and their annotated locations for NP_001101848.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    A0A8I6GHZ4, A6KH64
    Related
    ENSRNOP00000063340.3, ENSRNOT00000064643.3
    Conserved Domains (2) summary
    cd05242
    Location:10 → 297
    SDR_a8; atypical (a) SDRs, subgroup 8
    TIGR01777
    Location:10 → 293
    yfcH; TIGR01777 family protein

  2. NM_001399584.1 → NP_001386513.1  epimerase family protein SDR39U1 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000015
    UniProtKB/TrEMBL
    A6KH63
    Related
    ENSRNOP00000089306.1, ENSRNOT00000100964.2

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086033.1 Reference GRCr8

    Range
    33348057..33350892 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006251994.5 → XP_006252056.1  epimerase family protein SDR39U1 isoform X1

    See identical proteins and their annotated locations for XP_006252056.1

    Conserved Domains (1) summary
    cl21454
    Location:32 → 259
    NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
Nucleotide Protein Strain
Heading Accession and Version

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