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Ankrd37 ankyrin repeat domain 37 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361149, updated on 27-Nov-2024

Summary

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Official Symbol
Ankrd37provided by RGD
Official Full Name
ankyrin repeat domain 37provided by RGD
Primary source
RGD:1565715
See related
EnsemblRapid:ENSRNOG00000031335 AllianceGenome:RGD:1565715
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1565715
Summary
Predicted to be located in cytosol; mitochondrion; and nucleus. Predicted to be active in cytoplasm. Orthologous to human ANKRD37 (ankyrin repeat domain 37). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 75.0), Thymus (RPKM 27.5) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ankrd37 in Genome Data Viewer
Location:
16q11
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (53001487..53004545)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (46268933..46271971)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (49463016..49465905)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene cilia and flagella associated protein 97 Neighboring gene sorting nexin 25 Neighboring gene U6 spliceosomal RNA Neighboring gene Lrp2 binding protein Neighboring gene UFM1-specific peptidase 2 Neighboring gene cilia and flagella associated protein 96 Neighboring gene coiled-coil domain containing 110

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Mouse Fem1b interacts with and induces ubiquitin-mediated degradation of Ankrd37. Shi YQ, et al. Gene, 2011 Oct 10. PMID 21723927
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
  
located_in cytosol IEA
Inferred from Electronic Annotation
more info
  
located_in cytosol ISO
Inferred from Sequence Orthology
more info
  
located_in male germ cell nucleus ISO
Inferred from Sequence Orthology
more info
  
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
  
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ankyrin repeat domain-containing protein 37

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108400.3 → NP_001101870.1  ankyrin repeat domain-containing protein 37

    See identical proteins and their annotated locations for NP_001101870.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000016
    UniProtKB/TrEMBL
    B2RYS4, F7EMG3
    Related
    ENSRNOP00000088167.2, ENSRNOT00000120066.2
    Conserved Domains (3) summary
    cd00204
    Location:10 → 116
    ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
    pfam13637
    Location:66 → 116
    Ank_4; Ankyrin repeats (many copies)
    sd00045
    Location:30 → 61
    ANK; ANK repeat [structural motif]

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    53001487..53004545
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063275515.1 → XP_063131585.1  ankyrin repeat domain-containing protein 37 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A8T4

  2. XM_039094639.2 → XP_038950567.1  ankyrin repeat domain-containing protein 37 isoform X2

    UniProtKB/TrEMBL
    A6JPQ1
    Conserved Domains (2) summary
    sd00045
    Location:30 → 61
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:36 → 85
    Ank_2; Ankyrin repeats (3 copies)

  3. XM_063275516.1 → XP_063131586.1  ankyrin repeat domain-containing protein 37 isoform X3

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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