U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Fbxw17 F-box and WD-40 domain protein 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361219, updated on 27-Nov-2024

Summary

Official Symbol
Fbxw17provided by RGD
Official Full Name
F-box and WD-40 domain protein 17provided by RGD
Primary source
RGD:1566133
See related
EnsemblRapid:ENSRNOG00000030027 AllianceGenome:RGD:1566133
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1566133
Expression
Biased expression in Lung (RPKM 39.2), Kidney (RPKM 36.7) and 9 other tissues See more
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Fbxw17 in Genome Data Viewer
Location:
17p14
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (14511173..14529021)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (14359533..14379386)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (15076773..15094635, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene spermatogenesis-associated protein 31E1-like Neighboring gene SPATA31 subfamily A member 5 like 1 Neighboring gene hypothetical protein LOC689316 Neighboring gene NUT family member 2 Neighboring gene uncharacterized LOC134482691 Neighboring gene SPATA31 subfamily C member 2 like 3

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
Fbxw17 protein; fbxw17 protein

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001082409.1NP_001075878.1  Fbxw17 protein

    Status: PROVISIONAL

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    D3Z9G1
    Related
    ENSRNOP00000039789.5, ENSRNOT00000044073.6
    Conserved Domains (4) summary
    COG2319
    Location:90417
    WD40; WD40 repeat [General function prediction only]
    pfam12937
    Location:748
    F-box-like; F-box-like
    sd00039
    Location:151186
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:90408
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    14511173..14529021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008771541.4XP_008769763.3  fbxw17 protein isoform X1

  2. XM_039095862.2XP_038951790.2  fbxw17 protein isoform X6

  3. XM_063276563.1XP_063132633.1  fbxw17 protein isoform X5

  4. XM_063276561.1XP_063132631.1  fbxw17 protein isoform X3

    UniProtKB/TrEMBL
    A6J6U9
  5. XM_063276562.1XP_063132632.1  fbxw17 protein isoform X4

  6. XM_039095860.2XP_038951788.1  fbxw17 protein isoform X2

    UniProtKB/TrEMBL
    D3Z9G1
    Conserved Domains (2) summary
    COG2319
    Location:65392
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:126161
    7WD40; WD40 repeat [structural motif]
  7. XM_063276564.1XP_063132634.1  fbxw17 protein isoform X5

  8. XM_063276565.1XP_063132635.1  fbxw17 protein isoform X5

  9. XM_039095861.2XP_038951789.1  fbxw17 protein isoform X5