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Bend7 BEN domain containing 7 [ Rattus norvegicus (Norway rat) ]

Gene ID: 361275, updated on 27-Nov-2024

Summary

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Official Symbol
Bend7provided by RGD
Official Full Name
BEN domain containing 7provided by RGD
Primary source
RGD:1305898
See related
EnsemblRapid:ENSRNOG00000022712 AllianceGenome:RGD:1305898
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1305898
Summary
Predicted to enable DNA binding activity. Orthologous to human BEND7 (BEN domain containing 7). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 111.7), Kidney (RPKM 90.7) and 7 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Bend7 in Genome Data Viewer
Location:
17q12.3
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (78392489..78475459, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (73483212..73566221, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (77448430..77527888, complement)

Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097916 Neighboring gene selenophosphate synthetase 1 Neighboring gene uncharacterized LOC134482743 Neighboring gene cyclin-dependent kinases regulatory subunit 2 pseudogene Neighboring gene pre-mRNA processing factor 18 Neighboring gene F-box and leucine-rich repeat protein 14, pseudogene 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Large-scale proteomics and phosphoproteomics of urinary exosomes. Gonzales PA, et al. J Am Soc Nephrol, 2009 Feb. PMID 19056867, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
BEN domain-containing protein 7

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001432309.1 → NP_001419238.1  BEN domain-containing protein 7 isoform 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017

  2. NM_001432310.1 → NP_001419239.1  BEN domain-containing protein 7 isoform 2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000017
    UniProtKB/TrEMBL
    F1M8D4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086035.1 Reference GRCr8

    Range
    78392489..78475459 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039096483.2 → XP_038952411.1  BEN domain-containing protein 7 isoform X3

    UniProtKB/TrEMBL
    A6JM00
    Related
    ENSRNOP00000102919.1, ENSRNOT00000143101.1
    Conserved Domains (1) summary
    smart01025
    Location:283 → 367
    BEN; The BEN domain is found in diverse animal proteins

  2. XM_039096482.2 → XP_038952410.1  BEN domain-containing protein 7 isoform X2

    Conserved Domains (1) summary
    smart01025
    Location:311 → 395
    BEN; The BEN domain is found in diverse animal proteins

  3. XM_039096481.2 → XP_038952409.1  BEN domain-containing protein 7 isoform X1

    Related
    ENSRNOP00000110711.1, ENSRNOT00000126225.1
    Conserved Domains (1) summary
    smart01025
    Location:311 → 395
    BEN; The BEN domain is found in diverse animal proteins

  4. XM_039096484.2 → XP_038952412.1  BEN domain-containing protein 7 isoform X5

    UniProtKB/TrEMBL
    A6JM00
    Conserved Domains (1) summary
    smart01025
    Location:266 → 350
    BEN; The BEN domain is found in diverse animal proteins

  5. XM_039096487.2 → XP_038952415.1  BEN domain-containing protein 7 isoform X4

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001191834.2: Suppressed sequence

    Description
    NM_001191834.2: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

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