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Ccdc102a coiled-coil domain containing 102A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361363, updated on 27-Nov-2024

Summary

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Official Symbol
Ccdc102aprovided by RGD
Official Full Name
coiled-coil domain containing 102Aprovided by RGD
Primary source
RGD:1308684
See related
EnsemblRapid:ENSRNOG00000025843 AllianceGenome:RGD:1308684
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1308684
Summary
Predicted to be part of myosin complex. Orthologous to human CCDC102A (coiled-coil domain containing 102A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Lung (RPKM 32.7), Spleen (RPKM 30.7) and 9 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Ccdc102a in Genome Data Viewer
Location:
19p13
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (10108553..10124652)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (10102543..10118657)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (10518822..10535162)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene adhesion G protein-coupled receptor G1 Neighboring gene adhesion G protein-coupled receptor G5 Neighboring gene docking protein 4 Neighboring gene RNA polymerase II subunit C

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
part_of myosin complex IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 102A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108437.2 → NP_001101907.2  coiled-coil domain-containing protein 102A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    Related
    ENSRNOP00000035778.6, ENSRNOT00000030229.8

  2. NM_001434580.1 → NP_001421509.1  coiled-coil domain-containing protein 102A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019

  3. NM_001434581.1 → NP_001421510.1  coiled-coil domain-containing protein 102A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    10108553..10124652
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039097809.2 → XP_038953737.1  coiled-coil domain-containing protein 102A isoform X2

    Conserved Domains (1) summary
    TIGR02168
    Location:109 → 344
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

  2. XM_063278103.1 → XP_063134173.1  coiled-coil domain-containing protein 102A isoform X2

  3. XM_039097808.2 → XP_038953736.1  coiled-coil domain-containing protein 102A isoform X1

    UniProtKB/TrEMBL
    D3ZSR7
    Conserved Domains (2) summary
    COG1196
    Location:242 → 516
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl19849
    Location:104 → 228
    DUF881; Bacterial protein of unknown function (DUF881)

  4. XM_006255116.5 → XP_006255178.1  coiled-coil domain-containing protein 102A isoform X1

    UniProtKB/TrEMBL
    D3ZSR7
    Conserved Domains (2) summary
    COG1196
    Location:242 → 516
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    cl19849
    Location:104 → 228
    DUF881; Bacterial protein of unknown function (DUF881)
Nucleotide Protein Strain
Heading Accession and Version

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