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Fam89a family with sequence similarity 89, member A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361441, updated on 4-Jan-2025

Summary

Official Symbol
Fam89aprovided by RGD
Official Full Name
family with sequence similarity 89, member Aprovided by RGD
Primary source
RGD:1309879
See related
EnsemblRapid:ENSRNOG00000019022 AllianceGenome:RGD:1309879
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1309879
Summary
Orthologous to human FAM89A (family with sequence similarity 89 member A). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Liver (RPKM 30.4), Brain (RPKM 17.6) and 9 other tissues See more
Orthologs
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Genomic context

See Fam89a in Genome Data Viewer
Location:
19q12
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 19 NC_086037.1 (69607391..69620019, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 19 NC_051354.1 (52710002..52722630, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 19 NC_005118.4 (57502308..57514896, complement)

Chromosome 19 - NC_086037.1Genomic Context describing neighboring genes Neighboring gene tetratricopeptide repeat domain 13 Neighboring gene ARV1 homolog, fatty acid homeostasis modulator Neighboring gene transfer RNA alanine (anticodon AGC) 43 Neighboring gene tripartite motif-containing 67

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001011711.2NP_001011711.1  protein FAM89A

    See identical proteins and their annotated locations for NP_001011711.1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000019
    UniProtKB/Swiss-Prot
    Q6Q0N2
    UniProtKB/TrEMBL
    A6KJ17
    Related
    ENSRNOP00000025705.4, ENSRNOT00000025705.9

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086037.1 Reference GRCr8

    Range
    69607391..69620019 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)