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CG18004 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36154, updated on 9-Dec-2024

Summary

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Official Symbol
CG18004provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0033566
Locus tag
Dmel_CG18004
See related
AllianceGenome:FB:FBgn0033566
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG18004
Summary
Predicted to be involved in chromatin remodeling. Predicted to be located in nucleus. Predicted to be part of Ino80 complex. Is expressed in organism. Orthologous to human INO80E (INO80 complex subunit E). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See CG18004 in Genome Data Viewer
Location:
47C5-47C5; 2-63 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (10885019..10886375)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (6772524..6773880)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Peroxin 6 Neighboring gene Hydroxyacid oxidase Neighboring gene mir-1008 stem loop Neighboring gene uncharacterized protein Neighboring gene cag Neighboring gene uncharacterized protein Neighboring gene NADH dehydrogenase (ubiquinone) B14 subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The mirtron pathway generates microRNA-class regulatory RNAs in Drosophila. Okamura K, et al. Cell, 2007 Jul 13. PMID 17599402, Free PMC Article
  2. Analysis of insect nuclear small heat shock proteins and interacting proteins. Moutaoufik MT, et al. Cell Stress Chaperones, 2021 Jan. PMID 32888179, Free PMC Article
  3. Computational and experimental identification of mirtrons in Drosophila melanogaster and Caenorhabditis elegans. Chung WJ, et al. Genome Res, 2011 Feb. PMID 21177960, Free PMC Article
  4. Regulation of the BMP Signaling-Responsive Transcriptional Network in the Drosophila Embryo. Deignan L, et al. PLoS Genet, 2016 Jul. PMID 27379389, Free PMC Article
  5. Protein interaction mapping: a Drosophila case study. Formstecher E, et al. Genome Res, 2005 Mar. PMID 15710747, Free PMC Article

See all (26) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of Ino80 complex IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of Ino80 complex IEA
Inferred from Electronic Annotation
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG18004-PA
CG18004-PB
CG18004-PD

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    10885019..10886375
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_165808.2 → NP_724986.2  uncharacterized protein Dmel_CG18004, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724986.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1Z8D4, C6SV52
    Related
    FBpp0088670, FBtr0089729

  2. NM_136781.2 → NP_610625.1  uncharacterized protein Dmel_CG18004, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_610625.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1Z8D5, C6SV52

  3. NM_165807.3 → NP_724985.2  uncharacterized protein Dmel_CG18004, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_724985.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1Z8D6, C6SV52
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A1Z8D4 A1Z8D4
A1Z8D5 A1Z8D5
A1Z8D6 A1Z8D6
Q8MKK6 Q8MKK6

Gene LinkOut

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