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Garin5a golgi associated RAB2 interactor 5A [ Rattus norvegicus (Norway rat) ]

Gene ID: 361564, updated on 27-Nov-2024

Summary

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Official Symbol
Garin5aprovided by RGD
Official Full Name
golgi associated RAB2 interactor 5Aprovided by RGD
Primary source
RGD:1311142
See related
EnsemblRapid:ENSRNOG00000031739 AllianceGenome:RGD:1311142
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Fam71e1; RGD1311142
Summary
Predicted to be involved in defense response to virus; innate immune response; and positive regulation of type I interferon production. Predicted to be located in Golgi apparatus. Orthologous to human GARIN5A (golgi associated RAB2 interactor 5A). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Muscle (RPKM 389.8), Testes (RPKM 222.4) and 4 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Garin5a in Genome Data Viewer
Location:
1q22
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (104125477..104130543)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (94988959..94995971)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (100501556..100507334)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene transfer RNA alanine (anticodon AGC) 69 Neighboring gene ER membrane protein complex subunit 10 Neighboring gene myosin binding protein C2 Neighboring gene Spi-B transcription factor

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in defense response to virus ISO
Inferred from Sequence Orthology
more info
  
involved_in innate immune response ISO
Inferred from Sequence Orthology
more info
  
involved_in positive regulation of type I interferon production ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
Golgi-associated RAB2 interactor protein 5A
Names
family with sequence similarity 71, member E1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001400842.1 → NP_001387771.1  Golgi-associated RAB2 interactor protein 5A

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000001

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    104125477..104130543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063266601.1 → XP_063122671.1  Golgi-associated RAB2 interactor protein 5A isoform X4

    Related
    ENSRNOP00000108146.1, ENSRNOT00000124332.1

  2. XM_063266615.1 → XP_063122685.1  Golgi-associated RAB2 interactor protein 5A isoform X9

  3. XM_063266614.1 → XP_063122684.1  Golgi-associated RAB2 interactor protein 5A isoform X8

  4. XM_006229179.5 → XP_006229241.1  Golgi-associated RAB2 interactor protein 5A isoform X3

    See identical proteins and their annotated locations for XP_006229241.1

    UniProtKB/TrEMBL
    A0A8I6A4X8, D4A176
    Related
    ENSRNOP00000045841.5, ENSRNOT00000043724.6
    Conserved Domains (1) summary
    pfam12480
    Location:93 → 158
    DUF3699; Protein of unknown function (DUF3699)

  5. XM_039100946.2 → XP_038956874.1  Golgi-associated RAB2 interactor protein 5A isoform X10

    Conserved Domains (1) summary
    pfam12480
    Location:33 → 92
    DUF3699; Protein of unknown function (DUF3699)

  6. XM_039100948.2 → XP_038956876.1  Golgi-associated RAB2 interactor protein 5A isoform X11

    Conserved Domains (1) summary
    pfam12480
    Location:2 → 61
    DUF3699; Protein of unknown function (DUF3699)

  7. XM_063266626.1 → XP_063122696.1  Golgi-associated RAB2 interactor protein 5A isoform X12

  8. XM_039100945.2 → XP_038956873.1  Golgi-associated RAB2 interactor protein 5A isoform X10

    Conserved Domains (1) summary
    pfam12480
    Location:33 → 92
    DUF3699; Protein of unknown function (DUF3699)

  9. XM_039100947.2 → XP_038956875.1  Golgi-associated RAB2 interactor protein 5A isoform X10

    Conserved Domains (1) summary
    pfam12480
    Location:33 → 92
    DUF3699; Protein of unknown function (DUF3699)

  10. XM_006229180.5 → XP_006229242.2  Golgi-associated RAB2 interactor protein 5A isoform X2

    Conserved Domains (1) summary
    pfam12480
    Location:118 → 177
    DUF3699; Protein of unknown function (DUF3699)

  11. XM_006229182.5 → XP_006229244.2  Golgi-associated RAB2 interactor protein 5A isoform X7

    UniProtKB/TrEMBL
    A0A8I6A4X8
    Conserved Domains (1) summary
    pfam12480
    Location:118 → 177
    DUF3699; Protein of unknown function (DUF3699)

  12. XM_039100941.2 → XP_038956869.1  Golgi-associated RAB2 interactor protein 5A isoform X1

    Conserved Domains (1) summary
    pfam12480
    Location:118 → 177
    DUF3699; Protein of unknown function (DUF3699)

  13. XM_039100942.2 → XP_038956870.1  Golgi-associated RAB2 interactor protein 5A isoform X5

    UniProtKB/TrEMBL
    A0A8I6A4X8, A6JAQ1
    Conserved Domains (1) summary
    pfam12480
    Location:118 → 177
    DUF3699; Protein of unknown function (DUF3699)

  14. XM_039100943.1 → XP_038956871.1  Golgi-associated RAB2 interactor protein 5A isoform X6

    UniProtKB/TrEMBL
    A0A8I6A4X8
    Conserved Domains (1) summary
    pfam12480
    Location:118 → 177
    DUF3699; Protein of unknown function (DUF3699)
Nucleotide Protein Strain
Heading Accession and Version

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