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Golm2 golgi membrane protein 2 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362204, updated on 27-Nov-2024

Summary

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Official Symbol
Golm2provided by RGD
Official Full Name
golgi membrane protein 2provided by RGD
Primary source
RGD:1305985
See related
EnsemblRapid:ENSRNOG00000016357 AllianceGenome:RGD:1305985
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Casc4; RGD1305985
Summary
Predicted to be located in Golgi apparatus. Orthologous to human GOLM2 (golgi membrane protein 2). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Brain (RPKM 212.4), Lung (RPKM 81.1) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See Golm2 in Genome Data Viewer
Location:
3q35
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 3 NC_086021.1 (129280623..129349895)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 3 NC_051338.1 (108827017..108896207)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 3 NC_005102.4 (113818649..113887550)

Chromosome 3 - NC_086021.1Genomic Context describing neighboring genes Neighboring gene FERM domain containing 5 Neighboring gene barrier-to-autointegration factor-like Neighboring gene ribosomal protein S4, X-linked, pseudogene 2 Neighboring gene prohibitin 2, pseudogene 2 Neighboring gene uncharacterized LOC134486142 Neighboring gene CTD small phosphatase like 2 Neighboring gene eukaryotic translation initiation factor 3, subunit J Neighboring gene SPG11 vesicle trafficking associated, spatacsin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  
located_in Golgi apparatus ISO
Inferred from Sequence Orthology
more info
  
located_in membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
protein GOLM2
Names
cancer susceptibility 4
cancer susceptibility candidate 4
gene associated with HER-2/neu overexpression
protein CASC4

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001271283.2 → NP_001258212.1  protein GOLM2

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000003
    UniProtKB/TrEMBL
    A0A8I6AP68, D3ZW58
    Related
    ENSRNOP00000044061.6, ENSRNOT00000044158.8
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 195
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086021.1 Reference GRCr8

    Range
    129280623..129349895
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039105461.2 → XP_038961389.1  protein GOLM2 isoform X1

    UniProtKB/TrEMBL
    A0A8I6AAC2, A0A8I6AP68
    Related
    ENSRNOP00000088652.1, ENSRNOT00000102816.2
    Conserved Domains (1) summary
    TIGR02168
    Location:42 → 195
    SMC_prok_B; chromosome segregation protein SMC, common bacterial type
Nucleotide Protein Strain
Heading Accession and Version

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