U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Cdpf1 cysteine rich, DPF motif domain containing 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 362975, updated on 27-Nov-2024

Summary

Go to the top of the page Help
Official Symbol
Cdpf1provided by RGD
Official Full Name
cysteine rich, DPF motif domain containing 1provided by RGD
Primary source
RGD:1306001
See related
EnsemblRapid:ENSRNOG00000032846 AllianceGenome:RGD:1306001
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
RGD1306001
Summary
Orthologous to human CDPF1 (cysteine rich DPF motif domain containing 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Heart (RPKM 60.5), Muscle (RPKM 40.8) and 9 other tissues See more
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See Cdpf1 in Genome Data Viewer
Location:
7q34
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 7 NC_086025.1 (118773497..118785283, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 7 NC_051342.1 (116896672..116905438, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 7 NC_005106.4 (126687404..126692783, complement)

Chromosome 7 - NC_086025.1Genomic Context describing neighboring genes Neighboring gene microRNA let7c-2 Neighboring gene microRNA let-7b Neighboring gene peroxisome proliferator activated receptor alpha Neighboring gene polycystin family receptor for egg jelly Neighboring gene tetratricopeptide repeat domain 38

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene and alternative splicing annotation with AIR. Florea L, et al. Genome Res, 2005 Jan. PMID 15632090, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

General protein information

Go to the top of the page Help
Preferred Names
cysteine-rich DPF motif domain-containing protein 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001401168.1 → NP_001388097.1  cysteine-rich DPF motif domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007

  2. NM_001401169.1 → NP_001388098.1  cysteine-rich DPF motif domain-containing protein 1

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000007
    Related
    ENSRNOP00000052760.3, ENSRNOT00000055909.4

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086025.1 Reference GRCr8

    Range
    118773497..118785283 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_063263943.1 → XP_063120013.1  cysteine-rich DPF motif domain-containing protein 1 isoform X1

RNA

  1. XR_010053014.1 RNA Sequence

  2. XR_010053019.1 RNA Sequence

  3. XR_010053016.1 RNA Sequence

  4. XR_010053018.1 RNA Sequence

  5. XR_010053017.1 RNA Sequence

  6. XR_010053015.1 RNA Sequence

  7. XR_010053013.1 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001130696.1: Suppressed sequence

    Description
    NM_001130696.1: This RefSeq was removed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Tools