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Fam117b family with sequence similarity 117, member B [ Rattus norvegicus (Norway rat) ]

Gene ID: 363236, updated on 27-Nov-2024

Summary

Official Symbol
Fam117bprovided by RGD
Official Full Name
family with sequence similarity 117, member Bprovided by RGD
Primary source
RGD:1307676
See related
EnsemblRapid:ENSRNOG00000022066 AllianceGenome:RGD:1307676
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Als2cr13
Summary
Orthologous to human FAM117B (family with sequence similarity 117 member B). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Biased expression in Kidney (RPKM 127.2), Adrenal (RPKM 125.0) and 9 other tissues See more
Orthologs
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Genomic context

See Fam117b in Genome Data Viewer
Location:
9q31
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 9 NC_086027.1 (68834334..68902543)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 9 NC_051344.1 (61340284..61418531)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 9 NC_005108.4 (66716969..66784487)

Chromosome 9 - NC_086027.1Genomic Context describing neighboring genes Neighboring gene bone morphogenetic protein receptor type 2 Neighboring gene large ribosomal subunit protein eL21-like Neighboring gene diazepam binding inhibitor, acyl-CoA binding protein, pseudogene 3 Neighboring gene uncharacterized LOC120094801 Neighboring gene islet cell autoantigen 1-like Neighboring gene WD repeat domain 12 Neighboring gene calcium responsive transcription factor

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
protein FAM117B
Names
amyotrophic lateral sclerosis 2 (juvenile) chromosome region, candidate 13

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108797.2NP_001102267.2  protein FAM117B

    Status: VALIDATED

    Source sequence(s)
    JAXUCZ010000009
    UniProtKB/TrEMBL
    F1M8D5
    Related
    ENSRNOP00000029910.6, ENSRNOT00000031261.7

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086027.1 Reference GRCr8

    Range
    68834334..68902543
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_039083858.2XP_038939786.1  protein FAM117B isoform X1

    UniProtKB/TrEMBL
    A0A8I5ZYM6, A0A8I6ALF3
    Related
    ENSRNOP00000083133.1, ENSRNOT00000111864.2
    Conserved Domains (1) summary
    pfam15388
    Location:213493
    FAM117; Protein Family FAM117
  2. XM_039083860.2XP_038939788.1  protein FAM117B isoform X2

    Conserved Domains (1) summary
    pfam15388
    Location:90401
    FAM117; Protein Family FAM117