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Wdr17 WD repeat domain 17 [ Rattus norvegicus (Norway rat) ]

Gene ID: 364653, updated on 2-Nov-2024

Summary

Symbol
Wdr17provided by RGD
Full Name
WD repeat domain 17provided by RGD
Primary source
RGD:1590843
See related
EnsemblRapid:ENSRNOG00000048847 AllianceGenome:RGD:1590843
Gene type
protein coding
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Orthologous to human WDR17 (WD repeat domain 17). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward (RPKM 51.3) See more
Orthologs
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Genomic context

See Wdr17 in Genome Data Viewer
Location:
16p11
Exon count:
31
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 16 NC_086034.1 (43792989..43924187)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 16 NC_051351.1 (37059923..37191125)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 16 NC_005115.4 (39810285..39938953)

Chromosome 16 - NC_086034.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC120097473 Neighboring gene U6 spliceosomal RNA Neighboring gene glycoprotein m6a Neighboring gene pinin, desmosome associated protein, pseudogene 1 Neighboring gene spermatogenesis associated 4 Neighboring gene ankyrin repeat and SOCS box-containing 5

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General protein information

Preferred Names
WD repeat domain 17; WD repeat-containing protein 17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086034.1 Reference GRCr8

    Range
    43792989..43924187
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008771249.4XP_008769471.1  WD repeat-containing protein 17 isoform X2

    See identical proteins and their annotated locations for XP_008769471.1

    UniProtKB/TrEMBL
    A0A8I6A820
    Related
    ENSRNOP00000089373.1, ENSRNOT00000098016.2
    Conserved Domains (4) summary
    COG2319
    Location:373682
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:74298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  2. XM_017600361.3XP_017455850.1  WD repeat-containing protein 17 isoform X5

    UniProtKB/TrEMBL
    A0A8I6A820
    Related
    ENSRNOP00000108732.1, ENSRNOT00000159803.1
  3. XM_008771250.4XP_008769472.1  WD repeat-containing protein 17 isoform X4

    See identical proteins and their annotated locations for XP_008769472.1

    UniProtKB/TrEMBL
    M0R6L2
    Related
    ENSRNOP00000065064.4, ENSRNOT00000074885.4
    Conserved Domains (4) summary
    COG2319
    Location:373682
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:391681
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:357391
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:74298
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
  4. XM_017600362.3XP_017455851.1  WD repeat-containing protein 17 isoform X6

    UniProtKB/TrEMBL
    M0R6L2
  5. XM_017600359.3XP_017455848.1  WD repeat-containing protein 17 isoform X1

    UniProtKB/TrEMBL
    A0A8I6A820
  6. XM_003751595.6XP_003751643.1  WD repeat-containing protein 17 isoform X3

    See identical proteins and their annotated locations for XP_003751643.1

    UniProtKB/TrEMBL
    A0A0G2JWF6
    Related
    ENSRNOP00000069861.3, ENSRNOT00000081994.3
    Conserved Domains (4) summary
    COG2319
    Location:349658
    WD40; WD40 repeat [General function prediction only]
    cd00200
    Location:367657
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    sd00039
    Location:333367
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:50274
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...