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Cimap1a ciliary microtubule associated protein 1A [ Rattus norvegicus (Norway rat) ]

Gene ID: 365387, updated on 4-Jan-2025

Summary

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Official Symbol
Cimap1aprovided by RGD
Official Full Name
ciliary microtubule associated protein 1Aprovided by RGD
Primary source
RGD:1310028
See related
EnsemblRapid:ENSRNOG00000012858 AllianceGenome:RGD:1310028
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Also known as
Odf3
Summary
Predicted to be involved in flagellated sperm motility. Predicted to be active in outer dense fiber. Orthologous to human CIMAP1A (ciliary microtubule associated protein 1A). [provided by Alliance of Genome Resources, Jan 2025]
Expression
Biased expression in Testes (RPKM 125.2) and Brain (RPKM 8.4) See more
Orthologs
human mouse all
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Genomic context

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See Cimap1a in Genome Data Viewer
Location:
1q41
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 1 NC_086019.1 (205355601..205358882)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 1 NC_051336.1 (195926034..195929250)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 1 NC_005100.4 (213596784..213602417)

Chromosome 1 - NC_086019.1Genomic Context describing neighboring genes Neighboring gene Sec61 translocon subunit gamma, pseudogene 3 Neighboring gene protein transport protein Sec61 subunit gamma-like Neighboring gene secretoglobin, family 1C, member 1 Neighboring gene Bet1 golgi vesicular membrane trafficking protein-like Neighboring gene RIC8 guanine nucleotide exchange factor A Neighboring gene sirtuin 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

Bibliography

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Related articles in PubMed

  1. Molecular cloning and characterization of oppo 1: a haploid germ cell-specific complementary DNA encoding sperm tail protein. Nakamura Y, et al. Biol Reprod, 2002 Jul. PMID 12079992
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RGD

Process Evidence Code Pubs
involved_in flagellated sperm motility ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
is_active_in cytoskeleton IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in outer dense fiber IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in outer dense fiber ISO
Inferred from Sequence Orthology
more info
  
is_active_in sperm flagellum ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
ciliary microtubule associated protein 1A
Names
outer dense fiber of sperm tails 3
outer dense fiber protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001108924.1 → NP_001102394.1  ciliary microtubule associated protein 1A

    See identical proteins and their annotated locations for NP_001102394.1

    Status: PROVISIONAL

    Source sequence(s)
    CH473953
    UniProtKB/TrEMBL
    A6HXK8, D3ZE94
    Related
    ENSRNOP00000017562.3, ENSRNOT00000017562.6

RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086019.1 Reference GRCr8

    Range
    205355601..205358882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006230563.5 → XP_006230625.1  ciliary microtubule associated protein 1A isoform X1

  2. XM_039085385.2 → XP_038941313.1  ciliary microtubule associated protein 1A isoform X1

Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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