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CG42288 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36559, updated on 9-Dec-2024

Summary

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Official Symbol
CG42288provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0259184
Locus tag
Dmel_CG42288
See related
AllianceGenome:FB:FBgn0259184
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CG13353; Dmel\CG42288
Old locus tag
Dmel_CG13353
Summary
Predicted to be located in membrane. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG42288 in Genome Data Viewer
Location:
50D5-50D5; 2-68 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (14091031..14091814)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (9978536..9979319)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene mastermind Neighboring gene uncharacterized protein Neighboring gene prosap Neighboring gene uncharacterized protein Neighboring gene mir-989 stem loop Neighboring gene Reduction in Cnn dots 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A Presynaptic Function of Shank Protein in Drosophila. Wu S, et al. J Neurosci, 2017 Nov 29. PMID 29074576, Free PMC Article
  2. Pasiflora proteins are novel core components of the septate junction. Deligiannaki M, et al. Development, 2015 Sep 1. PMID 26329602, Free PMC Article
  3. Next-generation large-scale binary protein interaction network for Drosophila melanogaster. Tang HW, et al. Nat Commun, 2023 Apr 15. PMID 37061542, Free PMC Article
  4. A genome-wide Drosophila screen for heat nociception identifies α2δ3 as an evolutionarily conserved pain gene. Neely GG, et al. Cell, 2010 Nov 12. PMID 21074052, Free PMC Article
  5. Systematic genetic analysis of muscle morphogenesis and function in Drosophila. Schnorrer F, et al. Nature, 2010 Mar 11. PMID 20220848

See all (20) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in membrane ISM
Inferred from Sequence Model
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
Names
CG42288-PA
CG42288-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    14091031..14091814
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_137082.3 → NP_610926.2  uncharacterized protein Dmel_CG42288, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_610926.2

    Status: REVIEWED

    UniProtKB/TrEMBL
    A1Z9K9, C9QNX9

  2. NM_001259387.1 → NP_001246316.1  uncharacterized protein Dmel_CG42288, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001246316.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A0B4K721, C9QNX9
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4K721 A0A0B4K721
A1Z9K9 A1Z9K9

Gene LinkOut

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