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hpRNA:CR46340 hairpin RNA:CR46340 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 36786388, updated on 11-Sep-2024

Summary

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Official Symbol
hpRNA:CR46340provided by FlyBase
Official Full Name
hairpin RNA:CR46340provided by FlyBase
Primary source
FLYBASE:FBgn0285994
Locus tag
Dmel_CR46340
See related
AllianceGenome:FB:FBgn0285994
Gene type
ncRNA
RNA name
other
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR46340; dme-mir-997-2; Dmel\CR46340; hp-mir-997-2; miR-997; mir-997-2
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Genomic context

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See hpRNA:CR46340 in Genome Data Viewer
Location:
78D7-78D7; 3-47 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (21576445..21576683, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR43939 Neighboring gene mir-193 stem loop Neighboring gene ER membrane protein complex subunit 10 Neighboring gene Transcription factor AP-2 Neighboring gene long non-coding RNA:CR43940 Neighboring gene Site-1 protease

Genomic regions, transcripts, and products

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Genomic Sequence:
NT_037436.4 Chromosome 3L Reference Release 6 plus ISO1 MT Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Adaptive regulation of testis gene expression and control of male fertility by the Drosophila hairpin RNA pathway. [Corrected]. Wen J, et al. Mol Cell, 2015 Jan 8. PMID 25544562, Free PMC Article
  2. Adaptive evolution of testis-specific, recently evolved, clustered miRNAs in Drosophila. Mohammed J, et al. RNA, 2014 Aug. PMID 24942624, Free PMC Article
  3. A transgenic resource for conditional competitive inhibition of conserved Drosophila microRNAs. Fulga TA, et al. Nat Commun, 2015 Jun 17. PMID 26081261, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: mir-997-2 stem loop
  • putative non-coding RNA; hpRNA:CR46340-RA; Dmel\hpRNA:CR46340-RA; CR46340-RA; Dmel\CR46340-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    21576445..21576683 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_156793.2 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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