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OCT59_005680 uncharacterized protein [ Rhizophagus irregularis ]

Gene ID: 36884310, updated on 10-Jul-2024

Summary

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Gene symbol
OCT59_005680
Gene description
uncharacterized protein
Locus tag
OCT59_005680
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizophagus irregularis (isolate: DAOM-197198)
Lineage
Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus
Old locus tag
GLOIN_2v76828
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Genomic context

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See OCT59_005680 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
15
Sequence:
Chromosome: 13; NC_089441.1 (4947627..4951870)

Chromosome 13 - NC_089441.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene GTP-binding protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089441.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_089441.1 Reference assembly

    Range
    4947627..4951870
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025334012.2 → XP_025178042.1  uncharacterized protein OCT59_005680 [Rhizophagus irregularis]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A015LXQ7, A0A2I1FVZ7, A0A2P4Q0N4, A0A915YRD6
    Conserved Domains (1) summary
    COG5021
    Location:1 → 800
    HUL4; Ubiquitin-protein ligase [Posttranslational modification, protein turnover, chaperones]
Nucleotide Protein
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