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OCT59_023091 uncharacterized protein [ Rhizophagus irregularis ]

Gene ID: 36884323, updated on 10-Jul-2024

Summary

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Gene symbol
OCT59_023091
Gene description
uncharacterized protein
Locus tag
OCT59_023091
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Rhizophagus irregularis (isolate: DAOM-197198)
Lineage
Eukaryota; Fungi; Fungi incertae sedis; Mucoromycota; Glomeromycotina; Glomeromycetes; Glomerales; Glomeraceae; Rhizophagus
Old locus tag
GLOIN_2v779973
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Genomic context

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See OCT59_023091 in Genome Data Viewer
Location:
chromosome: 32
Exon count:
4
Sequence:
Chromosome: 32; NC_089460.1 (1356857..1357619)

Chromosome 32 - NC_089460.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_089460.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin-protein transferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein K6-linked ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BRCA1-BARD1 complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_089460.1 Reference assembly

    Range
    1356857..1357619
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025334025.2 → XP_025189353.1  uncharacterized protein OCT59_023091 [Rhizophagus irregularis]

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A015K0B3, A0A2I1DUR3, U9U5S0
    Conserved Domains (2) summary
    sd00045
    Location:4 → 30
    ANK; ANK repeat [structural motif]
    pfam12796
    Location:4 → 93
    Ank_2; Ankyrin repeats (3 copies)
Nucleotide Protein
Heading Accession and Version

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Molecular Biology Databases