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Obp56d Odorant-binding protein 56d [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37266, updated on 9-Dec-2024

Summary

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Official Symbol
Obp56dprovided by FlyBase
Official Full Name
Odorant-binding protein 56dprovided by FlyBase
Primary source
FLYBASE:FBgn0034470
Locus tag
Dmel_CG11218
See related
AllianceGenome:FB:FBgn0034470
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
56d; BcDNA:RE22207; BEST:GH09027; CG11218; CT31326; DmelObp56d; Dmel\CG11218; obp56d; OBP56d; RH69634p
Summary
Predicted to enable odorant binding activity. Involved in sensory perception of smell. Predicted to be located in extracellular region. Is expressed in anterior wing margin; organism subdivision; and sense organ. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See Obp56d in Genome Data Viewer
Location:
56E2-56E2; 2-90 cM
Exon count:
2
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (19702924..19703915, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (15590429..15591420, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene Odorant-binding protein 56b Neighboring gene Odorant-binding protein 56c Neighboring gene antisense RNA:CR44509 Neighboring gene Odorant-binding protein 56e Neighboring gene Odorant-binding protein 56f

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel odorant-binding proteins expressed in the taste tissue of the fly. Koganezawa M, et al. Chem Senses, 2002 May. PMID 12006372
  2. Association of polymorphisms in odorant-binding protein genes with variation in olfactory response to benzaldehyde in Drosophila. Wang P, et al. Genetics, 2007 Nov. PMID 17720903, Free PMC Article
  3. A Syndromic Neurodevelopmental Disorder Caused by Mutations in SMARCD1, a Core SWI/SNF Subunit Needed for Context-Dependent Neuronal Gene Regulation in Flies. Nixon KCJ, et al. Am J Hum Genet, 2019 Apr 4. PMID 30879640, Free PMC Article
  4. Proteomic analysis of individual fruit fly hemolymph. Zeng Q, et al. J Chromatogr B Analyt Technol Biomed Life Sci, 2015 Feb 15. PMID 25596379
  5. Organization and function of Drosophila odorant binding proteins. Larter NK, et al. Elife, 2016 Nov 15. PMID 27845621, Free PMC Article

See all (64) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables odorant binding IEA
Inferred from Electronic Annotation
more info
  
enables odorant binding ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
enables odorant binding NAS
Non-traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in olfactory behavior ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in response to pheromone ISS
Inferred from Sequence or Structural Similarity
more info
  
involved_in sensory perception of chemical stimulus ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in sensory perception of smell IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in sensory perception of smell IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular region ISM
Inferred from Sequence Model
more info
 PubMed 
located_in extracellular region ISS
Inferred from Sequence or Structural Similarity
more info
  

General protein information

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Preferred Names
Odorant-binding protein 56d
Names
CG11218-PA
CG11218-PB
Obp56d-PA
Obp56d-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    19702924..19703915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001299690.1 → NP_001286619.1  Odorant-binding protein 56d, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286619.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8SY61, Q9V8Y4
    UniProtKB/TrEMBL
    A0A0B4LGZ8, A9QHM4
    Conserved Domains (1) summary
    pfam01395
    Location:19 → 127
    PBP_GOBP; PBP/GOBP family

  2. NM_137600.3 → NP_611444.2  Odorant-binding protein 56d, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611444.2

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q8SY61, Q9V8Y4
    UniProtKB/TrEMBL
    A0A0B4LGZ8, A9QHM4
    Related
    FBpp0085673
    Conserved Domains (1) summary
    pfam01395
    Location:19 → 127
    PBP_GOBP; PBP/GOBP family
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4LGZ8 A0A0B4LGZ8
Q8SY61.2 Q8SY61

Gene LinkOut

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