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RNF111 ring finger protein 111 [ Gallus gallus (chicken) ]

Gene ID: 374021, updated on 3-Dec-2024

Summary

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Symbol
RNF111provided by CGNC
Full Name
ring finger protein 111provided by CGNC
Primary source
CGNC:3061
See related
Ensembl:ENSGALG00010022928
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
ARK
Orthologs
human mouse all
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Genomic context

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See RNF111 in Genome Data Viewer
Location:
chromosome: 10
Exon count:
18
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 10 NC_052541.1 (6841912..6891655, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 10 NC_052582.1 (6716994..6766751, complement)

Chromosome 10 - NC_052541.1Genomic Context describing neighboring genes Neighboring gene M-phase phosphoprotein 10 Neighboring gene myosin IE Neighboring gene family with sequence similarity 81 member A Neighboring gene uncharacterized LOC124417125 Neighboring gene cyclin B1 Neighboring gene family with sequence similarity 63 member B Neighboring gene SAFB like transcription modulator

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Induction of the mammalian node requires Arkadia function in the extraembryonic lineages. Episkopou V, et al. Nature, 2001 Apr 12. PMID 11298452
  2. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SMAD binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SUMO polymer binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transforming growth factor beta receptor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase Arkadia
Names
arkadia
NP_001186680.2
XP_015134231.2
XP_015134233.2
XP_015134234.2
XP_015134235.2
XP_015134237.2
XP_015134238.2
XP_015134239.2
XP_015134240.2
XP_025009554.2
XP_040562112.1
XP_040562113.1
XP_040562114.1
XP_040562116.1
XP_040562117.1
XP_046754829.1
XP_046754830.1
XP_046780399.1
XP_046780400.1
XP_046780401.1
XP_046780402.1
XP_046780403.1
XP_046780404.1
XP_046780405.1
XP_046780406.1
XP_046780407.1
XP_046780408.1
XP_046780409.1
XP_046780410.1
XP_046780411.1
XP_046780412.1
XP_046780413.1
XP_046780414.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001199751.2 → NP_001186680.2  E3 ubiquitin-protein ligase Arkadia

    Status: PROVISIONAL

    Source sequence(s)
    JAENSK010000245
    UniProtKB/TrEMBL
    A0A8V0ZSH4, Q90ZT8
    Related
    ENSGALP00010033782.1, ENSGALT00010055802.1
    Conserved Domains (1) summary
    cd16474
    Location:932 → 976
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052541.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    6841912..6891655 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_040706182.2 → XP_040562116.1  E3 ubiquitin-protein ligase Arkadia isoform X8

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:931 → 975
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  2. XM_040706178.2 → XP_040562112.1  E3 ubiquitin-protein ligase Arkadia isoform X6

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:939 → 983
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  3. XM_040706180.2 → XP_040562114.1  E3 ubiquitin-protein ligase Arkadia isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZSH4, Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:932 → 976
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  4. XM_015278754.4 → XP_015134240.2  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:940 → 984
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  5. XM_015278752.4 → XP_015134238.2  E3 ubiquitin-protein ligase Arkadia isoform X2

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:939 → 983
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  6. XM_046898873.1 → XP_046754829.1  E3 ubiquitin-protein ligase Arkadia isoform X4

    UniProtKB/TrEMBL
    Q90ZT8

  7. XM_025153786.3 → XP_025009554.2  E3 ubiquitin-protein ligase Arkadia isoform X10

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:909 → 953
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  8. XM_015278753.4 → XP_015134239.2  E3 ubiquitin-protein ligase Arkadia isoform X9

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:917 → 961
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  9. XM_015278747.4 → XP_015134233.2  E3 ubiquitin-protein ligase Arkadia isoform X1

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:940 → 984
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  10. XM_015278745.4 → XP_015134231.2  E3 ubiquitin-protein ligase Arkadia isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZQL6, Q90ZT8
    Related
    ENSGALP00010033785.1, ENSGALT00010055806.1
    Conserved Domains (1) summary
    cd16474
    Location:948 → 992
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  11. XM_046898874.1 → XP_046754830.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8

  12. XM_040706183.2 → XP_040562117.1  E3 ubiquitin-protein ligase Arkadia isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZSG9, Q90ZT8
    Related
    ENSGALP00010033777.1, ENSGALT00010055796.1
    Conserved Domains (1) summary
    cd16474
    Location:901 → 945
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  13. XM_040706179.2 → XP_040562113.1  E3 ubiquitin-protein ligase Arkadia isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZSH4, Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:932 → 976
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  14. XM_015278748.4 → XP_015134234.2  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:940 → 984
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  15. XM_015278751.4 → XP_015134237.2  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:940 → 984
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

  16. XM_015278749.3 → XP_015134235.2  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8
    Conserved Domains (1) summary
    cd16474
    Location:940 → 984
    RING-H2_RNF111_like; RING finger, H2 subclass, found in RING finger proteins RNF111, RNF165, and similar proteins

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052582.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    6716994..6766751 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046924455.1 → XP_046780411.1  E3 ubiquitin-protein ligase Arkadia isoform X8

    UniProtKB/TrEMBL
    Q90ZT8

  2. XM_046924452.1 → XP_046780408.1  E3 ubiquitin-protein ligase Arkadia isoform X6

    UniProtKB/TrEMBL
    Q90ZT8

  3. XM_046924453.1 → XP_046780409.1  E3 ubiquitin-protein ligase Arkadia isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZSH4, Q90ZT8

  4. XM_046924447.1 → XP_046780403.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8

  5. XM_046924444.1 → XP_046780400.1  E3 ubiquitin-protein ligase Arkadia isoform X2

    UniProtKB/TrEMBL
    Q90ZT8

  6. XM_046924446.1 → XP_046780402.1  E3 ubiquitin-protein ligase Arkadia isoform X4

    UniProtKB/TrEMBL
    Q90ZT8

  7. XM_046924457.1 → XP_046780413.1  E3 ubiquitin-protein ligase Arkadia isoform X10

    UniProtKB/TrEMBL
    Q90ZT8

  8. XM_046924456.1 → XP_046780412.1  E3 ubiquitin-protein ligase Arkadia isoform X9

    UniProtKB/TrEMBL
    Q90ZT8

  9. XM_046924443.1 → XP_046780399.1  E3 ubiquitin-protein ligase Arkadia isoform X1

    UniProtKB/TrEMBL
    Q90ZT8

  10. XM_046924445.1 → XP_046780401.1  E3 ubiquitin-protein ligase Arkadia isoform X3

    UniProtKB/TrEMBL
    A0A8V0ZQL6, Q90ZT8

  11. XM_046924451.1 → XP_046780407.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8

  12. XM_046924458.1 → XP_046780414.1  E3 ubiquitin-protein ligase Arkadia isoform X11

    UniProtKB/TrEMBL
    A0A8V0ZSG9, Q90ZT8

  13. XM_046924454.1 → XP_046780410.1  E3 ubiquitin-protein ligase Arkadia isoform X7

    UniProtKB/TrEMBL
    A0A8V0ZSH4, Q90ZT8

  14. XM_046924448.1 → XP_046780404.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8

  15. XM_046924449.1 → XP_046780405.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8

  16. XM_046924450.1 → XP_046780406.1  E3 ubiquitin-protein ligase Arkadia isoform X5

    UniProtKB/TrEMBL
    Q90ZT8
Nucleotide Protein Strain
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