U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

RpS16 Ribosomal protein S16 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37580, updated on 9-Dec-2024

Summary

Go to the top of the page Help
Official Symbol
RpS16provided by FlyBase
Official Full Name
Ribosomal protein S16provided by FlyBase
Primary source
FLYBASE:FBgn0034743
Locus tag
Dmel_CG4046
See related
AllianceGenome:FB:FBgn0034743
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
bs32d05.y1; CG4046; Dmel\CG4046; Rp S16; S16; S9
Summary
A structural constituent of ribosome. Predicted to be involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA). Located in cytosolic ribosome. Is expressed in adult head; adult heart; and organism. Orthologous to human RPS16 (ribosomal protein S16). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See RpS16 in Genome Data Viewer
Location:
58F1-58F1; 2-100 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (22605745..22607995)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (18493250..18495500)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45328 Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene ncRNA Neighboring gene uncharacterized protein Neighboring gene ncRNA Neighboring gene Vacuolar protein sorting 20 Neighboring gene testes of unusual size Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The mapping of Drosophila melanogaster mutant A.4.4. Bieser K, et al. MicroPubl Biol, 2018 Dec 17. PMID 32550366, Free PMC Article
  2. Small ribonucleoprotein particle protein SmD3 governs the homeostasis of germline stem cells and the crosstalk between the spliceosome and ribosome signals in Drosophila. Yu J, et al. FASEB J, 2019 Jul. PMID 30921522
  3. Srlp is crucial for the self-renewal and differentiation of germline stem cells via RpL6 signals in Drosophila testes. Yu J, et al. Cell Death Dis, 2019 Apr 1. PMID 30931935, Free PMC Article
  4. The Ribosomal Protein RpL22 Interacts In Vitro with 5'-UTR Sequences Found in Some Drosophila melanogaster Transposons. Minervini CF, et al. Genes (Basel), 2022 Feb 5. PMID 35205350, Free PMC Article
  5. RpS13 controls the homeostasis of germline stem cell niche through Rho1-mediated signals in the Drosophila testis. Wang M, et al. Cell Prolif, 2020 Oct. PMID 32896929, Free PMC Article

See all (69) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

Go to the top of the page

Interactions

Go to the top of the page Help
Products Interactant Other Gene Complex Source Pubs Description

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables RNA binding IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome HDA PubMed 
enables structural constituent of ribosome IBA
Inferred from Biological aspect of Ancestor
more info
  
enables structural constituent of ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation IC
Inferred by Curator
more info
 PubMed 
involved_in cytoplasmic translation TAS
Traceable Author Statement
more info
 PubMed 
involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytosolic ribosome HDA PubMed 
located_in cytosolic ribosome IDA
Inferred from Direct Assay
more info
 PubMed 
part_of cytosolic small ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic small ribosomal subunit TAS
Traceable Author Statement
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
ribosomal protein S16
Names
CG4046-PA
CG4046-PB
RpS16-PA
RpS16-PB

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    22605745..22607995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001299802.1 → NP_001286731.1  ribosomal protein S16, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001286731.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9W237
    UniProtKB/TrEMBL
    A0A0B4LG52
    Conserved Domains (1) summary
    PTZ00086
    Location:2 → 148
    PTZ00086; 40S ribosomal protein S16; Provisional

  2. NM_137841.4 → NP_611685.1  ribosomal protein S16, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_611685.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9W237
    UniProtKB/TrEMBL
    A0A0B4LG52
    Related
    FBpp0071766
    Conserved Domains (1) summary
    PTZ00086
    Location:2 → 148
    PTZ00086; 40S ribosomal protein S16; Provisional
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A0A0B4LG52 A0A0B4LG52
Q9W237.1 Q9W237

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Chemical Information
Molecular Biology Databases
Research Materials
Tools
Miscellaneous