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actin binding protein [ Arabidopsis thaliana (thale cress) ]

Gene ID: 3770686, updated on 18-Sep-2024

Summary

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Official Full Name
actin binding protein
Primary source
TAIR:AT5G07740
Locus tag
AT5G07740
See related
Araport:AT5G07740
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Arabidopsis thaliana (ecotype: Columbia)
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as
MBK20.20; MBK20_20
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Genomic context

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Location:
chromosome: 5
Exon count:
16
Sequence:
Chromosome: 5; NC_003076.8 (2458568..2467339, complement)

Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Galactosyl transferase GMA12/MNN10 family protein Neighboring gene uncharacterized protein Neighboring gene formin homology 2 domain-containing protein / FH2 domain-containing protein Neighboring gene Actin-binding FH2 protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_003076.8

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

GeneRIFs: Gene References Into Functions

General gene information

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NM_001342958.1
NM_120856.4

Gene Ontology Provided by TAIR

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in cytoplasm ISM
Inferred from Sequence Model
more info
  

General protein information

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Preferred Names
actin binding protein
NP_196391.2
  • actin binding; FUNCTIONS IN: actin binding; INVOLVED IN: cellular component organization, actin cytoskeleton organization; EXPRESSED IN: shoot apex, stem; CONTAINS InterPro DOMAIN/s: Actin-binding FH2/DRF autoregulatory (InterPro:IPR003104), C2 calcium/lipid-binding domain, CaLB (InterPro:IPR008973), Tensin phosphatase, C2 domain (InterPro:IPR014020), Actin-binding FH2 (InterPro:IPR015425); BEST Arabidopsis thaliana protein match is: Actin-binding FH2 protein (TAIR:AT5G07770.1).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_003076.8 Reference assembly

    Range
    2458568..2467339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001342957.1 → NP_001331227.1  actin binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD84, A0A5S9Y2B1

  2. NM_120856.4 → NP_196391.2  actin binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    Q9FLQ7, Q9FLQ8
    UniProtKB/TrEMBL
    A0A5S9Y2B1, A0A654FZ96
    Conserved Domains (5) summary
    pfam03251
    Location:507 → 661
    Tymo_45kd_70kd; Tymovirus 45/70Kd protein
    pfam02181
    Location:1237 → 1610
    FH2; Formin Homology 2 Domain
    pfam10409
    Location:198 → 337
    PTEN_C2; C2 domain of PTEN tumor-suppressor protein
    NF000535
    Location:315 → 526
    MSCRAMM_SdrC; MSCRAMM family adhesin SdrC
    cl28904
    Location:16 → 190
    PTP_DSP_cys; cys-based protein tyrosine phosphatase and dual-specificity phosphatase superfamily

  3. NM_001342958.1 → NP_001331228.1  actin binding protein [Arabidopsis thaliana]

    Status: REVIEWED

    UniProtKB/TrEMBL
    A0A1P8BD82, A0A5S9Y2B1
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9FLQ7.3

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