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sncRNA:649 small non-coding RNA 649 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3771788, updated on 11-Sep-2024

Summary

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Official Symbol
sncRNA:649provided by FlyBase
Official Full Name
small non-coding RNA 649provided by FlyBase
Primary source
FLYBASE:FBgn0065087
Locus tag
Dmel_CR33685
See related
AllianceGenome:FB:FBgn0065087
Gene type
ncRNA
RNA name
other
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
CR33685; Dm-649; Dmel\CR33685; snmRNA:649
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Genomic context

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See sncRNA:649 in Genome Data Viewer
Location:
87B9-87B9; 3-52 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (12413388..12413446, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (8239110..8239168, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene Dipeptidase C Neighboring gene protein partner of snf Neighboring gene Sarcoglycan beta Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. RNomics in Drosophila melanogaster: identification of 66 candidates for novel non-messenger RNAs. Yuan G, et al. Nucleic Acids Res, 2003 May 15. PMID 12736298, Free PMC Article
  2. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  3. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  4. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: small non-messenger RNA 649
  • putative non-coding RNA; sncRNA:649-RA; Dmel\sncRNA:649-RA; CR33685-RA; Dmel\CR33685-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    12413388..12413446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_002498.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

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