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lncRNA:bxd bithoraxoid [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3772220, updated on 4-Jan-2025

Summary

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Official Symbol
lncRNA:bxdprovided by FlyBase
Official Full Name
bithoraxoidprovided by FlyBase
Primary source
FLYBASE:FBgn0020556
Locus tag
Dmel_CR31273
See related
AllianceGenome:FB:FBgn0020556
Gene type
ncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
bxd; bxd RNA; CR31273; CR31277; Dmel\CR31273; lncRNA-bxd
Summary
Involved in negative regulation of DNA-templated transcription. Located in nucleus. [provided by Alliance of Genome Resources, Jan 2025]
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Genomic context

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See lncRNA:bxd in Genome Data Viewer
Location:
89E1-89E1; 3-59 cM
Exon count:
6
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3R NT_033777.3 (16742125..16773189, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3R NT_033777.2 (12567847..12598911, complement)

Chromosome 3R - NT_033777.3Genomic Context describing neighboring genes Neighboring gene modular serine protease Neighboring gene Ultrabithorax Neighboring gene antisense RNA:PS4 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44945 Neighboring gene Glucose transporter type 3

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Novel transcripts from the Ultrabithorax domain of the bithorax complex. Lipshitz HD, et al. Genes Dev, 1987 May. PMID 3119423
  2. Extensive conservation of sequences and chromatin structures in the bxd polycomb response element among Drosophilid species. Dellino GI, et al. Int J Dev Biol, 2002 Jan. PMID 11902674
  3. The function and regulation of Ultrabithorax in the legs of Drosophila melanogaster. Davis GK, et al. Dev Biol, 2007 Aug 15. PMID 17640629, Free PMC Article
  4. Noncoding RNAs of the Ultrabithorax domain of the Drosophila bithorax complex. Pease B, et al. Genetics, 2013 Dec. PMID 24077301, Free PMC Article
  5. The border between the ultrabithorax and abdominal-A regulatory domains in the Drosophila bithorax complex. Bender W, et al. Genetics, 2013 Apr. PMID 23288934, Free PMC Article

See all (75) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Association of Trl and Pc with bxd depends on transcriptional activity.
    Title: Association of trxG and PcG proteins with the bxd maintenance element depends on transcriptional activity.
Submit: New GeneRIF Correction

General gene information

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mobile_element

  • Loc: c16762507-16756375 mobile_element_type = transposon:diver{}1372

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in heterochromatin formation IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of DNA-templated transcription IEP
Inferred from Expression Pattern
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IDA
Inferred from Direct Assay
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033777.3 Reference assembly

    Range
    16742125..16773189 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_002035.1 RNA Sequence

    Status: REVIEWED

  2. NR_002032.1 RNA Sequence

    Status: REVIEWED

  3. NR_002033.2 RNA Sequence

    Status: REVIEWED

  4. NR_002034.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials