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lncRNA:CR33948 long non-coding RNA:CR33948 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3772461, updated on 11-Sep-2024

Summary

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Official Symbol
lncRNA:CR33948provided by FlyBase
Official Full Name
long non-coding RNA:CR33948provided by FlyBase
Primary source
FLYBASE:FBgn0063083
Locus tag
Dmel_CR33948
See related
AllianceGenome:FB:FBgn0063083
Gene type
ncRNA
RNA name
lncRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
BcDNA:LP12023; CR33948; Dmel\CR33948; pncr015:3L
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Genomic context

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See lncRNA:CR33948 in Genome Data Viewer
Location:
65F11-65F11; 3-20 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (7406323..7406617)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (7399423..7399719)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44525 Neighboring gene uncharacterized protein Neighboring gene Rac2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Identification of putative noncoding polyadenylated transcripts in Drosophila melanogaster. Tupy JL, et al. Proc Natl Acad Sci U S A, 2005 Apr 12. PMID 15809421, Free PMC Article
  2. Diverse and pervasive subcellular distributions for both coding and long noncoding RNAs. Wilk R, et al. Genes Dev, 2016 Mar 1. PMID 26944682, Free PMC Article
  3. High-fidelity promoter profiling reveals widespread alternative promoter usage and transposon-driven developmental gene expression. Batut P, et al. Genome Res, 2013 Jan. PMID 22936248, Free PMC Article
  4. Transcription elongation rate has a tissue-specific impact on alternative cleavage and polyadenylation in Drosophila melanogaster. Liu X, et al. RNA, 2017 Dec. PMID 28851752, Free PMC Article
  5. The many landscapes of recombination in Drosophila melanogaster. Comeron JM, et al. PLoS Genet, 2012. PMID 23071443, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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  • alternate names: putative noncoding RNA 015:3L
  • lncRNA:CR33948-RA; Dmel\lncRNA:CR33948-RA; CR33948-RA; Dmel\CR33948-RA

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    7406323..7406617
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_002480.2 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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