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snRNA:U4:38AB small nuclear RNA U4 at 38AB [ Drosophila melanogaster (fruit fly) ]

Gene ID: 3772477, updated on 9-Dec-2024

Summary

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Official Symbol
snRNA:U4:38ABprovided by FlyBase
Official Full Name
small nuclear RNA U4 at 38ABprovided by FlyBase
Primary source
FLYBASE:FBgn0003931
Locus tag
Dmel_CR32879
See related
AllianceGenome:FB:FBgn0003931
Gene type
ncRNA
RNA name
snRNA
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
38A U4; chr2L:19806693..19806927; CR32879; Dmel\CR32879; dU4; K3; snRNA:U4; snRNA:U4:40AB; U4; U4 snRNA; U4-1; U4-2; U4-38A; U4-38AB; U4-snRNA; U4:38AB; U4snRNA; U4snRNA40AB
Summary
Predicted to enable U6 snRNA binding activity. Predicted to be involved in mRNA splicing, via spliceosome. Predicted to be part of U4 snRNP. [provided by Alliance of Genome Resources, Dec 2024]
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Genomic context

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See snRNA:U4:38AB in Genome Data Viewer
Location:
38A4-38A4; 2-54 cM
Exon count:
1
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2L NT_033779.5 (19810734..19810875)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2L NT_033779.4 (19810734..19810875)

Chromosome 2L - NT_033779.5Genomic Context describing neighboring genes Neighboring gene Cd GTPase activating protein-related Neighboring gene female sterile (2) ltoPP43 Neighboring gene uncharacterized protein Neighboring gene small nuclear RNA U5 at 38AB a Neighboring gene small nuclear RNA U2 at 38AB b Neighboring gene sickie

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A phylogenetic study of Drosophila splicing assembly chaperone RNP-4F associated U4-/U6-snRNA secondary structure. Vaughn JC, et al. Open J Anim Sci, 2013 Nov. PMID 25419488, Free PMC Article
  2. Isolation and characterization of two putative full-length Drosophila U4 small nuclear RNA genes. Saba JA, et al. J Biol Chem, 1986 Jul 5. PMID 3722171
  3. Drosophila melanogaster genes for U1 snRNA variants and their expression during development. Lo PC, et al. Nucleic Acids Res, 1990 Dec 11. PMID 2124674, Free PMC Article
  4. The genes coding for 4 snRNAs of Drosophila melanogaster: localization and determination of gene numbers. Saluz HP, et al. Nucleic Acids Res, 1983 Jan 11. PMID 6191277, Free PMC Article
  5. DTL, the Drosophila homolog of PIMT/Tgs1 nuclear receptor coactivator-interacting protein/RNA methyltransferase, has an essential role in development. Komonyi O, et al. J Biol Chem, 2005 Apr 1. PMID 15684427

See all (40) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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  • alternate names: small nuclear RNA U4; U4 small nuclear RNA
  • snRNA:U4:38AB-RA; Dmel\snRNA:U4:38AB-RA; CR32879-RA; Dmel\CR32879-RA

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables U6 snRNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in formation of quadruple SL/U4/U5/U6 snRNP IEA
Inferred from Electronic Annotation
more info
  
involved_in mRNA splicing, via spliceosome ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
involved_in spliceosomal tri-snRNP complex assembly IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of U4 snRNP IEA
Inferred from Electronic Annotation
more info
  
part_of U4 snRNP ISS
Inferred from Sequence or Structural Similarity
more info
 PubMed 
part_of U4/U6 x U5 tri-snRNP complex IEA
Inferred from Electronic Annotation
more info
  

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033779.5 Reference assembly

    Range
    19810734..19810875
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. NR_001670.1 RNA Sequence

    Status: REVIEWED

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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