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RpL39 Ribosomal protein L39 [ Drosophila melanogaster (fruit fly) ]

Gene ID: 37849, updated on 9-Dec-2024

Summary

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Official Symbol
RpL39provided by FlyBase
Official Full Name
Ribosomal protein L39provided by FlyBase
Primary source
FLYBASE:FBgn0023170
Locus tag
Dmel_CG3997
See related
AllianceGenome:FB:FBgn0023170
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-EST:Posey16; BcDNA:RH27094; CG3997; Dmel\CG3997; L39; L39e; rp46; Rp46; RpL46; RPl46
Summary
Predicted to be a structural constituent of ribosome. Predicted to be involved in cytoplasmic translation. Predicted to be located in ribosome. Predicted to be part of cytosolic large ribosomal subunit. Is expressed in adult fat body and organism. Orthologous to human RPL39 (ribosomal protein L39); RPL39L (ribosomal protein L39 like); and RPL39P5 (ribosomal protein L39 pseudogene 5). [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See RpL39 in Genome Data Viewer
Location:
60B7-60B7; 2-106 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 2R NT_033778.4 (24061853..24062431, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 2R NT_033778.3 (19949376..19949954, complement)

Chromosome 2R - NT_033778.4Genomic Context describing neighboring genes Neighboring gene pickpocket 29 Neighboring gene uncharacterized protein Neighboring gene long non-coding RNA:CR44814 Neighboring gene eukaryotic translation elongation factor 5 Neighboring gene Ribosomal protein L12 Neighboring gene Ras-associated protein 2-like Neighboring gene yorkie

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Ribosome components are associated with sites of transcription. Brogna S, et al. Mol Cell, 2002 Jul. PMID 12150910
  2. Effect of Larval Nutrition on Maternal mRNA Contribution to the Drosophila Egg. Crofton AE, et al. G3 (Bethesda), 2018 May 31. PMID 29666195, Free PMC Article
  3. Identification of gene expression changes associated with long-term memory of courtship rejection in Drosophila males. Winbush A, et al. G3 (Bethesda), 2012 Nov. PMID 23173095, Free PMC Article
  4. In search of a Drosophila core cellular network with single-cell transcriptome data. Yang M, et al. G3 (Bethesda), 2022 Sep 30. PMID 35976114, Free PMC Article
  5. Ribosomal proteins: mutant phenotypes by the numbers and associated gene expression changes. Polymenis M. Open Biol, 2020 Aug. PMID 32810425, Free PMC Article

See all (46) citations in PubMed

GeneRIFs: Gene References Into Functions

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Function Evidence Code Pubs
enables structural constituent of ribosome IEA
Inferred from Electronic Annotation
more info
  
enables structural constituent of ribosome TAS
Traceable Author Statement
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic translation TAS
Traceable Author Statement
more info
 PubMed 
involved_in translation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
part_of cytosolic large ribosomal subunit IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of cytosolic large ribosomal subunit TAS
Traceable Author Statement
more info
 PubMed 
located_in ribosome IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
ribosomal protein L39
Names
CG3997-PA
RpL39-PA
ribosomal protein L46

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_033778.4 Reference assembly

    Range
    24061853..24062431 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_057966.5 → NP_477314.1  ribosomal protein L39 [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_477314.1

    Status: REVIEWED

    UniProtKB/Swiss-Prot
    O16130, Q9W1B7
    UniProtKB/TrEMBL
    A0A1B2ALR4
    Related
    FBpp0072094
    Conserved Domains (1) summary
    pfam00832
    Location:20 → 50
    Ribosomal_L39; Ribosomal L39 protein
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
O16130.2 O16130

Gene LinkOut

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