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HMGA1 high mobility group AT-hook 1 [ Gallus gallus (chicken) ]

Gene ID: 378795, updated on 3-Dec-2024

Summary

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Symbol
HMGA1provided by CGNC
Full Name
high mobility group AT-hook 1provided by CGNC
Primary source
CGNC:49124
See related
Ensembl:ENSGALG00010026300
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Orthologs
human mouse all
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Genomic context

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See HMGA1 in Genome Data Viewer
Location:
chromosome: 26
Exon count:
7
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 26 NC_052557.1 (4455431..4462185, complement)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 26 NC_052598.1 (4423138..4429912, complement)

Chromosome 26 - NC_052557.1Genomic Context describing neighboring genes Neighboring gene nudix hydrolase 3 Neighboring gene uncharacterized LOC100858737 Neighboring gene glutamate receptor, metabotropic 4 Neighboring gene uncharacterized LOC121107633

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Bimodal function of chromatin remodeler Hmga1 in neural crest induction and Wnt-dependent emigration. Gandhi S, et al. Elife, 2020 Sep 23. PMID 32965216, Free PMC Article
  2. Construction and analysis of cells lacking the HMGA gene family. Beitzel B, et al. Nucleic Acids Res, 2003 Sep 1. PMID 12930952, Free PMC Article
  3. HMG1A and PPARG are differently expressed in the liver of fat and lean broilers. Larkina TA, et al. J Appl Genet, 2011 May. PMID 21161624, Free PMC Article
  4. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  5. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Bimodal function of chromatin remodeler Hmga1 in neural crest induction and Wnt-dependent emigration.
    Title: Bimodal function of chromatin remodeler Hmga1 in neural crest induction and Wnt-dependent emigration.
  2. the HMG1A and PPARG genes were candidate genes for abdominal fat deposition in chickens
    Title: HMG1A and PPARG are differently expressed in the liver of fat and lean broilers.
Submit: New GeneRIF Correction

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of chromatin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
high mobility group protein HMG-I/HMG-Y

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001396357.1 → NP_001383286.1  high mobility group protein HMG-I/HMG-Y

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000356
    UniProtKB/TrEMBL
    Q6W8X3
    Conserved Domains (1) summary
    PHA03270
    Location:25 → 78
    PHA03270; envelope glycoprotein C; Provisional

  2. NM_204369.2 → NP_989700.1  high mobility group protein HMG-I/HMG-Y

    See identical proteins and their annotated locations for NP_989700.1

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000356
    UniProtKB/TrEMBL
    Q6W8X3
    Conserved Domains (1) summary
    PHA03270
    Location:25 → 78
    PHA03270; envelope glycoprotein C; Provisional

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052557.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    4455431..4462185 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046904078.1 → XP_046760034.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  2. XM_046904080.1 → XP_046760036.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  3. XM_046904081.1 → XP_046760037.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  4. XM_046904079.1 → XP_046760035.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  5. XM_046904077.1 → XP_046760033.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    A0A8V1A0L6
    Related
    ENSGALP00010039411.1, ENSGALT00010064010.1

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052598.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    4423138..4429912 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046932832.1 → XP_046788788.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  2. XM_046932835.1 → XP_046788791.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  3. XM_046932836.1 → XP_046788792.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  4. XM_046932834.1 → XP_046788790.1  high mobility group protein HMG-I/HMG-Y isoform X1

    UniProtKB/TrEMBL
    Q6W8X3

  5. XM_046932833.1 → XP_046788789.1  high mobility group protein HMG-I/HMG-Y isoform X2

    UniProtKB/TrEMBL
    A0A8V1A0L6
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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