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STX2 syntaxin 2 [ Gallus gallus (chicken) ]

Gene ID: 378895, updated on 3-Dec-2024

Summary

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Symbol
STX2provided by CGNC
Full Name
syntaxin 2provided by CGNC
Primary source
CGNC:49130
See related
Ensembl:ENSGALG00010023062
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Gallus gallus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Phasianinae; Gallus
Also known as
EPIM; syntaxin-2
Orthologs
human mouse all
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Genomic context

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See STX2 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
11
Annotation release Status Assembly Chr Location
106 current bGalGal1.mat.broiler.GRCg7b (GCF_016699485.2) 15 NC_052546.1 (3216245..3231349)
106 current bGalGal1.pat.whiteleghornlayer.GRCg7w (GCF_016700215.2) 15 NC_052587.1 (3220745..3235854)

Chromosome 15 - NC_052546.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC121106882 Neighboring gene adhesion G protein-coupled receptor D1 Neighboring gene RAN, member RAS oncogene family Neighboring gene RIMS binding protein 2 Neighboring gene piwi like RNA-mediated gene silencing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Epimorphin acts extracellularly to promote cell sorting and aggregation during the condensation of vertebral cartilage. Oka Y, et al. Dev Biol, 2006 Mar 1. PMID 16413528
  2. Full-length cDNAs from chicken bursal lymphocytes to facilitate gene function analysis. Caldwell RB, et al. Genome Biol, 2005. PMID 15642098, Free PMC Article
  3. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  4. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables SNAP receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables SNARE binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in exocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in synaptic vesicle fusion to presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle docking IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endomembrane system IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in presynaptic active zone membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in synaptic vesicle IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-2
Names
epimorphin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001389361.2 → NP_001376290.1  syntaxin-2

    Status: VALIDATED

    Source sequence(s)
    JAENSK010000260
    UniProtKB/TrEMBL
    A0A8V0ZU33
    Conserved Domains (2) summary
    pfam00804
    Location:28 → 225
    Syntaxin
    cl22856
    Location:193 → 259
    SNARE; SNARE motif

RefSeqs of Annotated Genomes: Gallus gallus Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

Genomic

  1. NC_052546.1 Reference bGalGal1.mat.broiler.GRCg7b Primary Assembly

    Range
    3216245..3231349
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015275155.4 → XP_015130641.1  syntaxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR60, A0A8V0ZU33
    Related
    ENSGALP00010033996.1, ENSGALT00010056178.1
    Conserved Domains (3) summary
    cd00179
    Location:28 → 179
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15882
    Location:189 → 257
    SNARE_syntaxin2; SNARE motif of syntaxin 2
    pfam00804
    Location:28 → 225
    Syntaxin; Syntaxin

  2. XM_015275157.4 → XP_015130643.1  syntaxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PY18, A0A8V0ZU33
    Related
    ENSGALP00010033988.1, ENSGALT00010056169.1
    Conserved Domains (3) summary
    cd00179
    Location:28 → 179
    SynN; Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may ...
    cd15882
    Location:189 → 257
    SNARE_syntaxin2; SNARE motif of syntaxin 2
    pfam00804
    Location:28 → 225
    Syntaxin; Syntaxin

Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

Genomic

  1. NC_052587.1 Alternate bGalGal1.pat.whiteleghornlayer.GRCg7w

    Range
    3220745..3235854
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_046927988.1 → XP_046783944.1  syntaxin-2 isoform X1

    UniProtKB/TrEMBL
    A0A8V0ZR60, A0A8V0ZU33

  2. XM_046927989.1 → XP_046783945.1  syntaxin-2 isoform X2

    UniProtKB/TrEMBL
    A0A1D5PY18, A0A8V0ZU33

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001079713.1: Suppressed sequence

    Description
    NM_001079713.1: This RefSeq was removed because currently there is support for the transcript but not for the protein.
Nucleotide Protein Strain
Heading Accession and Version

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