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Gm5168 predicted gene 5168 [ Mus musculus (house mouse) ]

Gene ID: 382275, updated on 27-Nov-2024

Summary

Official Symbol
Gm5168provided by MGI
Official Full Name
predicted gene 5168provided by MGI
Primary source
MGI:MGI:3703318
See related
Ensembl:ENSMUSG00000079655 AllianceGenome:MGI:3703318
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
EG382275
Summary
Predicted to be involved in meiotic cell cycle and spermatid development. Predicted to be active in synaptonemal complex. [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward testis adult (RPKM 3.2) See more
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Genomic context

See Gm5168 in Genome Data Viewer
Location:
X A2; X 18.01 cM
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (25983498..26006341, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (26028198..26051041, complement)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene X-linked lymphocyte-regulated protein PM1-like Neighboring gene predicted gene, 42169 Neighboring gene predicted gene, 42170 Neighboring gene STARR-seq mESC enhancer starr_46942 Neighboring gene predicted gene 2012

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC118210

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in meiotic cell cycle IBA
Inferred from Biological aspect of Ancestor
more info
 
involved_in spermatid development IBA
Inferred from Biological aspect of Ancestor
more info
 
Component Evidence Code Pubs
is_active_in synaptonemal complex IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
uncharacterized protein LOC382275

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001025607.4NP_001020778.1  uncharacterized protein LOC382275

    See identical proteins and their annotated locations for NP_001020778.1

    Status: VALIDATED

    Source sequence(s)
    BX571729
    Consensus CDS
    CCDS40895.1
    UniProtKB/TrEMBL
    Q4KL04
    Related
    ENSMUSP00000086568.3, ENSMUST00000089165.9
    Conserved Domains (1) summary
    pfam04803
    Location:129208
    Cor1; Cor1/Xlr/Xmr conserved region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    25983498..26006341 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)