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3110053B16Rik RIKEN cDNA 3110053B16 gene [ Mus musculus (house mouse) ]

Gene ID: 382686, updated on 22-Oct-2024

Summary

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Official Symbol
3110053B16Rikprovided by MGI
Official Full Name
RIKEN cDNA 3110053B16 geneprovided by MGI
Primary source
MGI:MGI:1920435
See related
Ensembl:ENSMUSG00000121318 AllianceGenome:MGI:1920435
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Broad expression in CNS E18 (RPKM 4.9), testis adult (RPKM 4.4) and 25 other tissues See more
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Genomic context

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See 3110053B16Rik in Genome Data Viewer
Location:
12 A1.2; 12 8.28 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (20923376..20971263, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (20892176..20921311, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700030C10 gene Neighboring gene STARR-seq mESC enhancer starr_31714 Neighboring gene predicted gene 6626 Neighboring gene STARR-seq mESC enhancer starr_31715 Neighboring gene STARR-seq mESC enhancer starr_31716 Neighboring gene STARR-seq mESC enhancer starr_31717 Neighboring gene predicted gene 5977 Neighboring gene STARR-seq mESC enhancer starr_31718 Neighboring gene STARR-seq mESC enhancer starr_31719 Neighboring gene STARR-seq mESC enhancer starr_31721 Neighboring gene ArfGAP with SH3 domain, ankyrin repeat and PH domain 2 Neighboring gene STARR-seq mESC enhancer starr_31722 Neighboring gene predicted gene, 40855

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. EUCOMM--the European conditional mouse mutagenesis program. Friedel RH, et al. Brief Funct Genomic Proteomic, 2007 Sep. PMID 17967808
  2. BayGenomics: a resource of insertional mutations in mouse embryonic stem cells. Stryke D, et al. Nucleic Acids Res, 2003 Jan 1. PMID 12520002, Free PMC Article
  3. Libraries enriched for alternatively spliced exons reveal splicing patterns in melanocytes and melanomas. Watahiki A, et al. Nat Methods, 2004 Dec. PMID 15782199
  4. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
  5. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article

See all (12) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_184691.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366
    Related
    ENSMUST00000332989.1

  2. NR_184692.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366
    Related
    ENSMUST00000332806.1

  3. NR_184693.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366
    Related
    ENSMUST00000332988.1

  4. NR_184694.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366

  5. NR_184695.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366
    Related
    ENSMUST00000332805.1

  6. NR_184696.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC158366
    Related
    ENSMUST00000332807.1

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    20923376..20971263 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001018110.1: Suppressed sequence

    Description
    NM_001018110.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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