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frm farmer [ Drosophila melanogaster (fruit fly) ]

Gene ID: 38624, updated on 9-Dec-2024

Summary

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Official Symbol
frmprovided by FlyBase
Official Full Name
farmerprovided by FlyBase
Primary source
FLYBASE:FBgn0035612
Locus tag
Dmel_CG10625
See related
AllianceGenome:FB:FBgn0035612
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
anon-WO0118547.236; CG10625; Dmel\CG10625
Summary
Predicted to be active in extracellular space. Is expressed in embryonic dorsal epidermis; embryonic head epidermis; and embryonic ventral epidermis. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
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Genomic context

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See frm in Genome Data Viewer
Location:
64D3-64D3; 3-14 cM
Exon count:
13
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (5538411..5551159, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (5531511..5544259, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene Leucokinin receptor Neighboring gene uncharacterized protein Neighboring gene Succinyl-coenzyme A synthetase beta subunit, GDP-forming Neighboring gene sinuous

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Systematic G-protein-coupled receptor analysis in Drosophila melanogaster identifies a leucokinin receptor with novel roles. Radford JC, et al. J Biol Chem, 2002 Oct 11. PMID 12163486
  2. Drep-2 is a novel synaptic protein important for learning and memory. Andlauer TF, et al. Elife, 2014 Nov 13. PMID 25392983, Free PMC Article
  3. Genome-wide identification of Grainy head targets in Drosophila reveals regulatory interactions with the POU domain transcription factor Vvl. Yao L, et al. Development, 2017 Sep 1. PMID 28760809, Free PMC Article
  4. Sex-Specific Transcript Diversity in the Fly Head Is Established during Pupal Stages and Adulthood and Is Largely Independent of the Mating Process and the Germline. Mohr C, et al. Sex Dev, 2017. PMID 28273663
  5. Editor's Highlight: Genetic Targets of Acute Toluene Inhalation in Drosophila melanogaster. Bushnell PJ, et al. Toxicol Sci, 2017 Mar 1. PMID 28013218, Free PMC Article

See all (31) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Component Evidence Code Pubs
is_active_in extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
farmer
Names
CG10625-PA
CG10625-PB
CG10625-PC
CG10625-PD
CG10625-PE
CG10625-PG
CG10625-PH
CG10625-PI
CG10625-PJ
CG10625-PK
frm-PA
frm-PB
frm-PC
frm-PD
frm-PE
frm-PG
frm-PH
frm-PI
frm-PJ
frm-PK

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    5538411..5551159 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001144417.3 → NP_001137889.1  farmer, isoform J [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137889.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0B7
    Conserved Domains (2) summary
    TIGR00855
    Location:637 → 731
    L12; ribosomal protein L7/L12
    cl22429
    Location:664 → 740
    HHH_5; Helix-hairpin-helix domain

  2. NM_001104040.2 → NP_001097510.1  farmer, isoform E [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097510.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q86NR7
    Conserved Domains (1) summary
    pfam00379
    Location:54 → 102
    Chitin_bind_4; Insect cuticle protein

  3. NM_139713.5 → NP_647970.1  farmer, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_647970.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T018
    Related
    FBpp0076843

  4. NM_168121.4 → NP_729075.1  farmer, isoform C [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729075.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRM2
    Related
    FBpp0076845
    Conserved Domains (1) summary
    pfam00379
    Location:54 → 102
    Chitin_bind_4; Insect cuticle protein

  5. NM_168119.4 → NP_729073.1  farmer, isoform D [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729073.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q8T018
    Related
    FBpp0076844

  6. NM_001144416.3 → NP_001137888.1  farmer, isoform I [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137888.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0B8
    Conserved Domains (3) summary
    TIGR00855
    Location:637 → 745
    L12; ribosomal protein L7/L12
    cl00788
    Location:632 → 714
    MttA_Hcf106; mttA/Hcf106 family
    cl22429
    Location:678 → 754
    HHH_5; Helix-hairpin-helix domain

  7. NM_001144415.3 → NP_001137887.1  farmer, isoform H [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137887.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B7Z0B9
    Conserved Domains (4) summary
    TIGR00855
    Location:1051 → 1159
    L12; ribosomal protein L7/L12
    pfam00379
    Location:54 → 102
    Chitin_bind_4; Insect cuticle protein
    cl00788
    Location:1046 → 1128
    MttA_Hcf106; mttA/Hcf106 family
    cl22429
    Location:1092 → 1168
    HHH_5; Helix-hairpin-helix domain

  8. NM_168120.4 → NP_729074.1  farmer, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_729074.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    Q9VRM2
    Related
    FBpp0076846
    Conserved Domains (1) summary
    pfam00379
    Location:54 → 102
    Chitin_bind_4; Insect cuticle protein

  9. NM_001104042.3 → NP_001097512.1  farmer, isoform G [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001097512.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JNL3

  10. NM_001144418.3 → NP_001137890.1  farmer, isoform K [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001137890.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    A8JNL3
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
A8JNL3 A8JNL3
B7Z0B7 B7Z0B7
B7Z0B8 B7Z0B8
B7Z0B9 B7Z0B9
Q86NR7 Q86NR7
Q8T018 Q8T018
Q9VRM2 Q9VRM2

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