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Ssxb9 SSX member B9 [ Mus musculus (house mouse) ]

Gene ID: 387131, updated on 27-Nov-2024

Summary

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Official Symbol
Ssxb9provided by MGI
Official Full Name
SSX member B9provided by MGI
Primary source
MGI:MGI:2446778
See related
Ensembl:ENSMUSG00000068218 AllianceGenome:MGI:2446778
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in synovial sarcoma. Orthologous to several human genes including SSX2 (SSX family member 2); SSX2B (SSX family member 2B); and SSX3 (SSX family member 3). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Low expression observed in reference dataset See more
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Genomic context

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See Ssxb9 in Genome Data Viewer
Location:
X A1.1; X 3.79 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) X NC_000086.8 (8233217..8241627)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) X NC_000086.7 (8366978..8375388)

Chromosome X - NC_000086.8Genomic Context describing neighboring genes Neighboring gene solute carrier family 38, member 5 Neighboring gene SSX member B10 Neighboring gene STARR-seq mESC enhancer starr_46696 Neighboring gene SSX member B1 Neighboring gene SSX member B2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Identification and characterization of mouse SSX genes: a multigene family on the X chromosome with restricted cancer/testis expression. Chen YT, et al. Genomics, 2003 Dec. PMID 14611804
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 

General gene information

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Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleus ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
synovial sarcoma, X member B, breakpoint 9
Names
synovial sarcoma, X member B9

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_199066.2 → NP_951021.2  synovial sarcoma, X member B, breakpoint 9

    See identical proteins and their annotated locations for NP_951021.2

    Status: VALIDATED

    Source sequence(s)
    BX890632
    Consensus CDS
    CCDS29996.2
    UniProtKB/TrEMBL
    A2BI93, Q6XAR8
    Related
    ENSMUSP00000111247.3, ENSMUST00000115584.3
    Conserved Domains (1) summary
    cl02581
    Location:38 → 93
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000086.8 Reference GRCm39 C57BL/6J

    Range
    8233217..8241627
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011247479.1 → XP_011245781.1  synovial sarcoma, X member B, breakpoint 9 isoform X2

    See identical proteins and their annotated locations for XP_011245781.1

    UniProtKB/TrEMBL
    A2BI93, Q6XAR8
    Conserved Domains (1) summary
    cl02581
    Location:38 → 93
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box

  2. XM_011247478.1 → XP_011245780.1  synovial sarcoma, X member B, breakpoint 9 isoform X1

    Conserved Domains (1) summary
    cl02581
    Location:38 → 93
    KRAB_A-box; KRAB (Kruppel-associated box) domain -A box
Nucleotide Protein Strain
Heading Accession and Version

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