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CTSL3P cathepsin L family member 3, pseudogene [ Homo sapiens (human) ]

Gene ID: 392360, updated on 10-Dec-2024

Summary

Official Symbol
CTSL3Pprovided by HGNC
Official Full Name
cathepsin L family member 3, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:33132
See related
Ensembl:ENSG00000290757 AllianceGenome:HGNC:33132
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTSL3; HCTSL-s
Expression
Low expression observed in reference dataset See more
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Genomic context

See CTSL3P in Genome Data Viewer
Location:
9q21.33
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (87772915..87786884)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (99926316..99940266)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (90387830..90401799)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene EIF3J pseudogene 3 Neighboring gene uncharacterized LOC124902198 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr9:90407204-90408403 Neighboring gene Sharpr-MPRA regulatory region 3109 Neighboring gene death associated protein kinase 1 pseudogene Neighboring gene H3K4me1 hESC enhancer GRCh37_chr9:90415146-90415646 Neighboring gene ELF2 pseudogene 3 Neighboring gene nuclear pore associated protein 1 pseudogene 7

Genomic regions, transcripts, and products

Expression

  • Project title: Tissue-specific circular RNA induction during human fetal development
  • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
  • BioProject: PRJNA270632
  • Publication: PMID 26076956
  • Analysis date: Mon Apr 2 22:54:59 2018

Interactions

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027917.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ851862, AL160279
    Related
    ENST00000354530.2

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    87772915..87786884
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    99926316..99940266
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

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