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CG6163 uncharacterized protein [ Drosophila melanogaster (fruit fly) ]

Gene ID: 39274, updated on 9-Dec-2024

Summary

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Official Symbol
CG6163provided by FlyBase
Official Full Name
uncharacterized proteinprovided by FlyBase
Primary source
FLYBASE:FBgn0036155
Locus tag
Dmel_CG6163
See related
AllianceGenome:FB:FBgn0036155
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Drosophila melanogaster
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora
Also known as
Dmel\CG6163
Summary
Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be part of transcription regulator complex. Predicted to be active in nucleus. Is expressed in organism. [provided by Alliance of Genome Resources, Dec 2024]
Orthologs
all
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Genomic context

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See CG6163 in Genome Data Viewer
Location:
68C4-68C4; 3-36 cM
Exon count:
3
Annotation release Status Assembly Chr Location
Release 6.54 current Release 6 plus ISO1 MT (GCF_000001215.4) 3L NT_037436.4 (11361986..11364885, complement)
Release 5.57 previous assembly Release 5 (GCF_000001215.2) 3L NT_037436.3 (11355086..11357985, complement)

Chromosome 3L - NT_037436.4Genomic Context describing neighboring genes Neighboring gene long non-coding RNA:CR45250 Neighboring gene long non-coding RNA:CR45251 Neighboring gene long non-coding RNA:CR45036 Neighboring gene long non-coding RNA:CR42755 Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Female Genetic Contributions to Sperm Competition in Drosophila melanogaster. Chen DS, et al. Genetics, 2019 Jul. PMID 31101677, Free PMC Article
  2. Large neurological component to genetic differences underlying biased sperm use in Drosophila. Chow CY, et al. Genetics, 2013 Jan. PMID 23105014, Free PMC Article
  3. A Drosophila protein-interaction map centered on cell-cycle regulators. Stanyon CA, et al. Genome Biol, 2004. PMID 15575970, Free PMC Article
  4. Phylostratigraphic bias creates spurious patterns of genome evolution. Moyers BA, et al. Mol Biol Evol, 2015 Jan. PMID 25312911, Free PMC Article
  5. A protein interaction map of Drosophila melanogaster. Giot L, et al. Science, 2003 Dec 5. PMID 14605208

See all (21) citations in PubMed

GeneRIFs: Gene References Into Functions

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Homology

Gene Ontology Provided by FlyBase

Process Evidence Code Pubs
involved_in regulation of transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of transcription regulator complex IBA
Inferred from Biological aspect of Ancestor
more info
  

General protein information

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Preferred Names
uncharacterized protein
Names
CG6163-PA
CG6163-PB

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NT_037436.4 Reference assembly

    Range
    11361986..11364885 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_140203.1 → NP_648460.1  uncharacterized protein Dmel_CG6163, isoform A [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_648460.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3DN79, Q9VTH8
    Related
    FBpp0075911, FBtr0076181
    Conserved Domains (1) summary
    smart00595
    Location:226 → 316
    MADF; subfamily of SANT domain

  2. NM_001274780.1 → NP_001261709.1  uncharacterized protein Dmel_CG6163, isoform B [Drosophila melanogaster]

    See identical proteins and their annotated locations for NP_001261709.1

    Status: REVIEWED

    UniProtKB/TrEMBL
    B3DN79, Q9VTH8
    Conserved Domains (1) summary
    smart00595
    Location:226 → 316
    MADF; subfamily of SANT domain
Nucleotide Protein
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9VTH8 Q9VTH8

Gene LinkOut

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