rbbp5 retinoblastoma binding protein 5 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: rbbp5provided by ZNC
Official Full Name: retinoblastoma binding protein 5provided by ZNC
Primary source: ZFIN:ZDB-GENE-040426-886
See related: Ensembl:ENSDARG00000042147 AllianceGenome:ZFIN:ZDB-GENE-040426-886
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: zgc:56078; zgc:85864
Summary: Part of protein-containing complex. Orthologous to human RBBP5 (RB binding protein 5, histone lysine methyltransferase complex subunit). [provided by Alliance of Genome Resources, Nov 2024]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 22

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
RS_2024_08	current	GRCz11 (GCF_000002035.6)	22	NC_007133.7 (769999..784086, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	22	NC_007133.6 (732276..746824, complement)

Chromosome 22 - NC_007133.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed

Component	Evidence Code	Pubs
part_of Set1C/COMPASS complex	IEA Inferred from Electronic Annotation more info
part_of protein-containing complex	IPI Inferred from Physical Interaction more info	PubMed

General protein information

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Preferred Names: retinoblastoma-binding protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_200245.1 → NP_956539.1 retinoblastoma-binding protein 5

See identical proteins and their annotated locations for NP_956539.1

Status: PROVISIONAL

Source sequence(s)

BC047822

UniProtKB/TrEMBL

Q7ZUU9

Related

ENSDARP00000061774.5, ENSDART00000061775.6

Conserved Domains (3) summary

COG2319
Location:38 → 321

WD40; WD40 repeat [General function prediction only]

sd00039
Location:29 → 64

7WD40; WD40 repeat [structural motif]

cl02567
Location:30 → 322

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

NC_007133.7 Reference GRCz11 Primary Assembly

Range

769999..784086 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_005168268.5 → XP_005168325.1 retinoblastoma-binding protein 5 isoform X1

UniProtKB/TrEMBL

A0A8M2BFL1

Conserved Domains (3) summary

COG2319
Location:38 → 321

WD40; WD40 repeat [General function prediction only]

sd00039
Location:29 → 64

7WD40; WD40 repeat [structural motif]

cl02567
Location:30 → 322

WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...