U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

lyar Ly1 antibody reactive homolog (mouse) [ Danio rerio (zebrafish) ]

Gene ID: 393652, updated on 4-Jan-2025

Summary

Go to the top of the page Help
Official Symbol
lyarprovided by ZNC
Official Full Name
Ly1 antibody reactive homolog (mouse)provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1414
See related
Ensembl:ENSDARG00000098507 AllianceGenome:ZFIN:ZDB-GENE-040426-1414
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:65749
Summary
Predicted to enable DNA binding activity and metal ion binding activity. Predicted to be located in nucleus. Orthologous to human LYAR (Ly1 antibody reactive). [provided by Alliance of Genome Resources, Jan 2025]
Annotation information
Annotation category: suggests misassembly
Annotation category: partial on reference assembly
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See lyar in Genome Data Viewer
Location:
chromosome: 14
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 14 NC_007125.7 (30786..34751)
105 previous assembly GRCz10 (GCF_000002035.5) 14 NC_007125.6 (219615..223538, complement)

Chromosome 14 - NC_007125.7Genomic Context describing neighboring genes Neighboring gene syntaxin 18 Neighboring gene zinc finger and BTB domain containing 49 Neighboring gene transmembrane protein 128 Neighboring gene otopetrin 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Expression

Go to the top of the page Help
  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Spatiotemporal compartmentalization of key physiological processes during muscle precursor differentiation. Ozbudak EM, et al. Proc Natl Acad Sci U S A, 2010 Mar 2. PMID 20160088, Free PMC Article
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Markers

Homology

Clone Names

  • MGC65749

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
  
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

Go to the top of the page Help
Preferred Names
cell growth-regulating nucleolar protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200679.3 → NP_956973.2  cell growth-regulating nucleolar protein

    Status: VALIDATED

    Source sequence(s)
    EH581157, FQ377959
    UniProtKB/TrEMBL
    A0A8M1PD89
    Related
    ENSDARP00000140940.2, ENSDART00000166173.2
    Conserved Domains (1) summary
    pfam08790
    Location:31 → 58
    zf-LYAR; LYAR-type C2HC zinc finger

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007125.7 Reference GRCz11 Primary Assembly

    Range
    30786..34751
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases
Research Materials