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gorasp2 golgi reassembly stacking protein 2 [ Danio rerio (zebrafish) ]

Gene ID: 393676, updated on 4-Jan-2025

Summary

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Official Symbol
gorasp2provided by ZNC
Official Full Name
golgi reassembly stacking protein 2provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1659
See related
Ensembl:ENSDARG00000015126 AllianceGenome:ZFIN:ZDB-GENE-040426-1659
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:73072
Summary
Predicted to be involved in Golgi organization. Predicted to be active in Golgi apparatus. Orthologous to human GORASP2 (golgi reassembly stacking protein 2). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See gorasp2 in Genome Data Viewer
Location:
chromosome: 6
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 6 NC_007117.7 (3864040..3875115)
105 previous assembly GRCz10 (GCF_000002035.5) 6 NC_007117.6 (3703220..3714288)

Chromosome 6 - NC_007117.7Genomic Context describing neighboring genes Neighboring gene glutamate-rich 2 Neighboring gene glutamate decarboxylase 1b Neighboring gene tousled-like kinase 1b Neighboring gene dynein, cytoplasmic 1, intermediate chain 2b

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. The Golgi matrix protein giantin is required for normal cilia function in zebrafish. Bergen DJM, et al. Biol Open, 2017 Aug 15. PMID 28546340, Free PMC Article
  2. Structure, evolution and expression of collagen XXVIII: Lessons from the zebrafish. Gebauer JM, et al. Matrix Biol, 2016 Jan. PMID 26235539
  3. Hematopoietic gene expression profile in zebrafish kidney marrow. Song HD, et al. Proc Natl Acad Sci U S A, 2004 Nov 16. PMID 15520368, Free PMC Article
  4. Evolution of complexity in the zebrafish synapse proteome. Bayés À, et al. Nat Commun, 2017 Mar 2. PMID 28252024, Free PMC Article
  5. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article

See all (7) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC73072

Gene Ontology Provided by ZFIN

Process Evidence Code Pubs
involved_in Golgi organization IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
is_active_in Golgi apparatus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
Golgi reassembly-stacking protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_200703.2 → NP_956997.1  Golgi reassembly-stacking protein 2

    See identical proteins and their annotated locations for NP_956997.1

    Status: PROVISIONAL

    Source sequence(s)
    AY398354
    UniProtKB/TrEMBL
    Q6PC76
    Related
    ENSDARP00000017335.8, ENSDART00000013743.9
    Conserved Domains (2) summary
    pfam04495
    Location:69 → 205
    GRASP55_65; GRASP55/65 PDZ-like domain
    cl00117
    Location:14 → 100
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007117.7 Reference GRCz11 Primary Assembly

    Range
    3864040..3875115
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021476811.2 → XP_021332486.1  Golgi reassembly-stacking protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A8M9QA83
    Conserved Domains (3) summary
    pfam04495
    Location:69 → 205
    GRASP55_65; GRASP55/65 PDZ-like domain
    cl00117
    Location:14 → 100
    PDZ; PDZ domain, also called DHR (Dlg homologous region) or GLGF (after a conserved sequence motif). Many PDZ domains bind C-terminal polypeptides, though binding to internal (non-C-terminal) polypeptides and even to lipids has been demonstrated. ...
    cl26464
    Location:216 → 420
    Atrophin-1; Atrophin-1 family
Nucleotide Protein Strain
Heading Accession and Version

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