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srp9 signal recognition particle 9 [ Danio rerio (zebrafish) ]

Gene ID: 394071, updated on 4-Jan-2025

Summary

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Official Symbol
srp9provided by ZNC
Official Full Name
signal recognition particle 9provided by ZNC
Primary source
ZFIN:ZDB-GENE-040426-1106
See related
Ensembl:ENSDARG00000042851 AllianceGenome:ZFIN:ZDB-GENE-040426-1106
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Danio rerio
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as
zgc:56668
Summary
Predicted to enable 7S RNA binding activity. Predicted to be involved in SRP-dependent cotranslational protein targeting to membrane. Predicted to act upstream of or within negative regulation of translational elongation. Predicted to be located in cytoplasm. Predicted to be part of signal recognition particle, endoplasmic reticulum targeting. Orthologous to human SRP9 (signal recognition particle 9). [provided by Alliance of Genome Resources, Jan 2025]
Orthologs
human mouse all
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Genomic context

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See srp9 in Genome Data Viewer
Location:
chromosome: 20
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCz11 (GCF_000002035.6) 20 NC_007131.7 (36623802..36627358)
105 previous assembly GRCz10 (GCF_000002035.5) 20 NC_007131.6 (36720923..36724479)

Chromosome 20 - NC_007131.7Genomic Context describing neighboring genes Neighboring gene ENAH actin regulator Neighboring gene golgin subfamily A member 6-like protein 25 Neighboring gene golgin subfamily A member 6-like protein 25 Neighboring gene epoxide hydrolase 1, microsomal (xenobiotic) Neighboring gene solute carrier family 5 member 6a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
  • BioProject: PRJEB1986
  • Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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Related articles in PubMed

  1. Activating transcription factor 3 coordinates differentiation of cardiac and hematopoietic progenitors by regulating glucose metabolism. Yin HM, et al. Sci Adv, 2020 May. PMID 32494702, Free PMC Article
  2. RFX transcription factors are essential for hearing in mice. Elkon R, et al. Nat Commun, 2015 Oct 15. PMID 26469318, Free PMC Article
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article
  5. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Clone Names

  • MGC56668

Gene Ontology Provided by ZFIN

Function Evidence Code Pubs
enables 7S RNA binding IEA
Inferred from Electronic Annotation
more info
  
enables RNA binding IEA
Inferred from Electronic Annotation
more info
  
Process Evidence Code Pubs
involved_in SRP-dependent cotranslational protein targeting to membrane IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within SRP-dependent cotranslational protein targeting to membrane IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within negative regulation of translational elongation IEA
Inferred from Electronic Annotation
more info
  
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
  
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
  
part_of signal recognition particle IEA
Inferred from Electronic Annotation
more info
  
part_of signal recognition particle, endoplasmic reticulum targeting IBA
Inferred from Biological aspect of Ancestor
more info
  
part_of signal recognition particle, endoplasmic reticulum targeting IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
signal recognition particle 9 kDa protein
NP_957390.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_201096.3 → NP_957390.1  signal recognition particle 9 kDa protein

    Status: VALIDATED

    Source sequence(s)
    BX255939, EB763853, EH541182, EH562298
    UniProtKB/TrEMBL
    A0A8M1PIP3, Q7ZW94
    Related
    ENSDARP00000124362.1, ENSDART00000149171.3
    Conserved Domains (1) summary
    pfam05486
    Location:4 → 73
    SRP9-21; Signal recognition particle 9 kDa protein (SRP9)

RefSeqs of Annotated Genomes: GCF_000002035.6-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCz11 Primary Assembly

Genomic

  1. NC_007131.7 Reference GRCz11 Primary Assembly

    Range
    36623802..36627358
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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